Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1284 ATGCCTAACCCAATCACTCGCTCCATTTTTCTTCCTTTGATTTTCCTCTTGATTTCCAATTCTCTGTTTCCACAAATCTGGGTTGTCTCAGGTTCCTATGTTCCTGATAATCGCTTCCAGAGACCCTATCCTCTTCGACGTTTCAAACTCTACAATGGAGGTTTTGATATTCGACATAAGCGTTACCTTGCTGAGTTCACGGCTACGCCATTGTCGGAGTCTGGTTATTATGTGGACTGGTCTTGTAAGTCGGTGAGGAGAACAGAGAAACTGAAGGATTCGGTGCTGGGTATAGGAGAAGATGCTCTGAGGACACTGAGCAGATTGATTAAAAAGATTAAACAAATGCAATATCTTCTTCCATATAACCAACAGATAACTGGGAATTTGAATACTGCAGTTGAAAGTTTCAGGAGCGACTCGAGTGTGATCCATCGTTTTCTTGCCTCAAGTGGACCACTAGGCAAGCATAATCCTGAAGTACGAGATAGTGTATTTGCGTTTTGCTGTATAAGTTGTGTGATATGGCTTCTGCAAGATTATGTGACGATTTTTGCAGAAGATGCGTGTTTTGCTTTTGAGAAATTCGAACAGAAGCCACAGAACAGTAGCCTGAGCTCGATGTTACCATGCATGAATGAGTCAGACGCAGCCAAGTTGATGAGTCGGATAGGCTCCACAATTCAAGAATTCATCGCAGAGTTGAATGCTAAAATGTCGGAAATTTATGGTATATTGGGAATAGATAAGCAGGCCCAGAAAATGATAGGAATTATAAAGATATGTGCACCTTTCTCTGGACCACCAGATCACAACTTCATTCCATATTCTTGCCCTCAAAATGCCATTCCCGTTGGCGACTTACCAAAAGTAAGCCTTCTTCTACACTATCAATTTAAATTCTGGCAAGATTCAAATGTGGGAAAGAGGAAAGAGCAGAGGATTGTGAGAAGGAAGGGAAGTTTGTTCCAGAAGCAGCGTACGACGCAGCTGACGCTTTACAGTAGATCTATTGAGGATTTTCTGGACAATCCAGATTTGCAGACTCTATCAAGATGCTCCTTTCTCAAGACCAGAACCTCAGATATATTGTTGCACCAATGCAGACCCTTAAAACTTGCACTTAGATTAGCTTCTAGCTCTGGGCATCCAGCTGGTCGCAAGAATAGCTATGGATGCTCAAGTGTACATTACATAGATGAGCATTGGCTTGAAGATAAAAAGGAAGAGAGAAAGAGAATGAGGAACAAACACAGGAAGCCAACAAATTTATGTTGCAATGCAGGGAGCAGATTTTCTGCATTTGCTGTGGTGTGGAGCTTGGTAGGATGCATCCTTTTAATTCATTTTTATTCCAATATTCATCAAAGAGAGAGGGAAGGTGGAGAGGTTCGATTGCGAGTAAGCCGTCATCCCCAACTCCGTGAGCTTCAACAGGTGGAGGAGGAGGAGAACATCCGAATTCCCCCACCAAAGGGAAAGAGGTCCCCTAGGGCAGCAAAACGTAGACCTAAGCGCACAACTACAGTGATTGATGAATTCCTTGATGAAAATTCACAACTGAGACACCTATTTTTTCCTGGTCACAAAAGGGCTATAGATACAGCAAACGCTGGGAATGAAAGTTATTATTACTACCCCGGCAGAATCTGGTTGGATACAGATGGAAATCCTATTCAAGCCCATGGAGGTGGCATTTTGTATGATAAAAACTCGAGGACATACTATTGGTATGGTGAGTATAAAGATGGGCCCACTTACCGTGCTCACAAGAAAGGAGCTGCCCGCGTGGACGTTATAGGAGTTGGCTGTTATTCTTCCCAGGATTTGTGGACTTGGAAAAATGAGGGAATTGTATTGGGGGCAGTGGAAACAAATGAAACTCATGACCTGCACAAGTCCAATGTGCTTGAGAGGCCAAAAGTGATTTATAACGACAAAACTAGAAAATATGTGATGTGGATGCACATAGATGATGCAAATTATACAAAAGCTGCTGTCGGGATAGCAGTCAGTGATACTCCTGATGGTCCTTTTGATTATCTTGGTAGCCAAAGGCCACATGGATATGAAAGCAGGGATATGACAGTTTTCAAGGATGATGATGGTGTGGCATATCTAATATACTCTTCTGAGGAAAATAGTGTACTGCACATTGGACCGTTAACTGAAGATTATCTTAATGTGACTTCTGTCATGAGAAGGATCCTAGTGGGGCAGCACAGAGAAGCGCCTGCTCTATTCAAGCACCAGGGCACATACTATATGATCACATCCGGCTGCACTGGGTGGGCCCCTAATGAGGCACTGGCTCATGCATCTGATTCAATATTGGGGCCATGGGAAACAATGGGAAATCCATGCGTCGGAGGGAACAAAGTATTTCGACTGACAACTTTCTTCGCTCAGAGCACTTTTGTGATCCCTATACCTGGATACCCTGGTTCATTTATTTTTATGGCAGATCGGTGGAATCCTGCAGACCTAAGGGACTCAAGATATGTATGGTTACCTTTGATAGTGGCAGGACCTGCTGATCAACCTCTGGAGTACAATTTTGAGTTCCCATTATGGTCAAGAGTTTCTGTCTTTTGGCACAGAAAATGGAGACTGCCTCTGGGATGGCGGGGATTCATATAA 2640 0.433 MPNPITRSIFLPLIFLLISNSLFPQIWVVSGSYVPDNRFQRPYPLRRFKLYNGGFDIRHKRYLAEFTATPLSESGYYVDWSCKSVRRTEKLKDSVLGIGEDALRTLSRLIKKIKQMQYLLPYNQQITGNLNTAVESFRSDSSVIHRFLASSGPLGKHNPEVRDSVFAFCCISCVIWLLQDYVTIFAEDACFAFEKFEQKPQNSSLSSMLPCMNESDAAKLMSRIGSTIQEFIAELNAKMSEIYGILGIDKQAQKMIGIIKICAPFSGPPDHNFIPYSCPQNAIPVGDLPKVSLLLHYQFKFWQDSNVGKRKEQRIVRRKGSLFQKQRTTQLTLYSRSIEDFLDNPDLQTLSRCSFLKTRTSDILLHQCRPLKLALRLASSSGHPAGRKNSYGCSSVHYIDEHWLEDKKEERKRMRNKHRKPTNLCCNAGSRFSAFAVVWSLVGCILLIHFYSNIHQREREGGEVRLRVSRHPQLRELQQVEEEENIRIPPPKGKRSPRAAKRRPKRTTTVIDEFLDENSQLRHLFFPGHKRAIDTANAGNESYYYYPGRIWLDTDGNPIQAHGGGILYDKNSRTYYWYGEYKDGPTYRAHKKGAARVDVIGVGCYSSQDLWTWKNEGIVLGAVETNETHDLHKSNVLERPKVIYNDKTRKYVMWMHIDDANYTKAAVGIAVSDTPDGPFDYLGSQRPHGYESRDMTVFKDDDGVAYLIYSSEENSVLHIGPLTEDYLNVTSVMRRILVGQHREAPALFKHQGTYYMITSGCTGWAPNEALAHASDSILGPWETMGNPCVGGNKVFRLTTFFAQSTFVIPIPGYPGSFIFMADRWNPADLRDSRYVWLPLIVAGPADQPLEYNFEFPLWSRVSVFWHRKWRLPLGWRGFI 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1284 879 PANTHER GLYCOSYL HYDROLASE 43 FAMILY MEMBER 437 872 - -
Lele55g1284 879 MobiDBLite consensus disorder prediction 481 506 - -
Lele55g1284 879 SUPERFAMILY Arabinanase/levansucrase/invertase 557 840 IPR023296 -
Lele55g1284 879 CDD GH43_CtGH43-like 559 839 - -
Lele55g1284 879 Pfam Glycosyl hydrolases family 43 600 784 IPR006710 GO:0004553|GO:0005975
Lele55g1284 879 Gene3D Glycosyl hydrolase domain; family 43 528 855 IPR023296 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1284 Lele-ChrLele55 19316672 19325392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1284 404 872 Glycoside Hydrolase AT5G67540 69.792 0.0 704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0361 49 2126847 2133024 Lele55g1284 55 19316672 19325392 CCT
Lele53g0201 53 1679129 1681749 Lele55g1284 55 19316672 19325392 hybridization
Lele54g0205 54 1761476 1764115 Lele55g1284 55 19316672 19325392 hybridization