Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1278 ATGCCAGTGTCCCCGAACCACCTCGTAACTCTTGACTTGTTTTGCAATGAAGCAGCTAGCGACTTGGTTTCATCGAATTCCGATGTTACTGACTGTGAATCTTTGGGGGCTTCTTCATGGGATTCCGATGATGAAAGCTGTCTCTTGACCTTACTGGATTCTGCACTTGATCAAATACACGAAAGACAACAGTCACATTCACTTCTTCACGAAAAACCATGGCTCAGAACTGCTAGAGAAGAAGCCATTAAGTGGATGCTAAAGGTGCAAAGTTACTACAGTTTTACACCGGAGACGGCATGTTTATCCGTGAACTATCTTGATCGTTTTCTTTTGTCACACTCATTGCCGCAAGATGAAGCGTGGCCATTGCAGTTAGTTGCAGTGGCTTGTTTATCTGTGGCAGCAAAAATGGAAGAAACAAGGGTGCCACTTTTAGTAGATTTACAAATGATAGAGCCTAGGTTCTTGTTTAAGCCTAAAACGGTTCAAAGAATGGAGCTTTTGGTTATGGCGGCTCTCAGGTGGCGATTGCGTGCTGTTACTCCTTTTGATTTTGCTAATCTTTTCATTGCTAAGGCTAATAATAAGTTATCATGCTCTGCCTCCTGCCACATTATTTCTCGCGTCGCAGATATTATAATCAGAACATGTTTAGTAATCGATTTCTTAGAGTATCCTCCATCTGTAATAGCTGCTGCTGCTATGCTTTGGACAACCAATCAATATGTTGATGAACAGAATCTAAGTTTCTTCCACGAAAATATAAACAGAGTGATGGTGCAGAAATGTTACAACCTCATGAAGCAGAGGATTTTCAGATCAGAACATTTTGCAACAACGAATTCGGATTCATTGCCTTTAAGTCCGACTTGTGTGCTTGATCTTGCAGCTATACAAGAAAACAGAAAGGATCACAAGCCCTGA 927 0.4142 MPVSPNHLVTLDLFCNEAASDLVSSNSDVTDCESLGASSWDSDDESCLLTLLDSALDQIHERQQSHSLLHEKPWLRTAREEAIKWMLKVQSYYSFTPETACLSVNYLDRFLLSHSLPQDEAWPLQLVAVACLSVAAKMEETRVPLLVDLQMIEPRFLFKPKTVQRMELLVMAALRWRLRAVTPFDFANLFIAKANNKLSCSASCHIISRVADIIIRTCLVIDFLEYPPSVIAAAAMLWTTNQYVDEQNLSFFHENINRVMVQKCYNLMKQRIFRSEHFATTNSDSLPLSPTCVLDLAAIQENRKDHKP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1278 308 PANTHER CYCLINS 65 272 IPR039361 -
Lele55g1278 308 SMART cyclin_7 84 172 IPR013763 -
Lele55g1278 308 SUPERFAMILY Cyclin-like 62 178 IPR036915 -
Lele55g1278 308 Pfam Cyclin, N-terminal domain 62 178 IPR006671 -
Lele55g1278 308 ProSitePatterns Cyclins signature. 79 110 IPR006671 -
Lele55g1278 308 FunFam D6-type cyclin 62 179 - -
Lele55g1278 308 Pfam Cyclin, C-terminal domain 181 272 IPR004367 -
Lele55g1278 308 Gene3D - 72 179 - -
Lele55g1278 308 Gene3D - 180 265 - -
Lele55g1278 308 SMART Cyclin_C_2 181 291 IPR004367 -
Lele55g1278 308 SUPERFAMILY Cyclin-like 163 288 IPR036915 -
Lele55g1278 308 CDD CYCLIN 79 171 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1278 Lele-ChrLele55 19277344 19278661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1278 11 269 Core Cell Cycle Gene Families AT1G70210 40.876 6.12e-58 187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0209 53 1719259 1720567 Lele55g1278 55 19277344 19278661 hybridization
Lele54g0213 54 1800386 1801798 Lele55g1278 55 19277344 19278661 hybridization