Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1265 ATGCCTCAACCTCGGTCGGGTTCCCAACGAGTGGGAAAGGAATTGCCAGCTGATGTTATGGTGGCCGGAACAACCGTCGCCATGATGCATCTTACAATGCTTAACTTCTCTTCAAGATTTCTAATGCCTCTAAGGAGTAGTAATGGCCGACCCAGCAGAAGAAGATGGTACCATCGCATTTGTTTAATGAGCAGTGCTGATGATGGTTCAGACTCATCGGAATCTGAAACCCAAGATTTCCCTCCTCCACCTAATATACCGGACGATCACATTTTCCCGCCGCCGGAGATGCCAAGCCCAGCTTCTGAAGATAATTGGCCACTTCACCCACCGCCTCCACCTCCGCCTCCGTTTATGCGAAACCATGATCTTGTTCAACGACCAATCCGTGAGAATGTAACTGAAATCTTGAGAGATGAAGATGATCATTATCATGGTGGAGCGAAAATGGATGGGATTAGGAATATGGAAATAACGGAGGCGATTACAAGAGAGAAAACCATATGTCCCATATGCAAGGATGAGTTCAAATTGGGAGAAAATGCAGGAAAATTACCTTGTGACCATTTCTTTTGCTTTGAATGCATTCATGGTTGGCTCAACCTTAACGAAAACAATAATACTTGCCCTGTTTGTCGTCTTCGCTTGCCTTCCGGGGAGGATTTCCAACGACCACCGCAATTCGCAGTGCCACCACCACCTCAACTTCTTGATGGTCCCTGGCAAAATTTCTTCTCTCTTCCTGTGACGATTCTTAGTGTCCGATCAGAATTTGTTGATGATGATGAAACTGAGTCGTCACCTTCCCCATCGGTGAACAATAGTGAAGCTGGTTATGACACTGCTCGAGACGAGCTTGATGCATCTATCGCCCGTTCCTAG 882 0.466 MPQPRSGSQRVGKELPADVMVAGTTVAMMHLTMLNFSSRFLMPLRSSNGRPSRRRWYHRICLMSSADDGSDSSESETQDFPPPPNIPDDHIFPPPEMPSPASEDNWPLHPPPPPPPPFMRNHDLVQRPIRENVTEILRDEDDHYHGGAKMDGIRNMEITEAITREKTICPICKDEFKLGENAGKLPCDHFFCFECIHGWLNLNENNNTCPVCRLRLPSGEDFQRPPQFAVPPPPQLLDGPWQNFFSLPVTILSVRSEFVDDDETESSPSPSVNNSEAGYDTARDELDASIARS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1265 293 ProSitePatterns Zinc finger RING-type signature. 187 196 IPR017907 -
Lele55g1265 293 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 55 213 - -
Lele55g1265 293 SMART ring_2 169 212 IPR001841 -
Lele55g1265 293 MobiDBLite consensus disorder prediction 66 113 - -
Lele55g1265 293 Coils Coil 279 293 - -
Lele55g1265 293 MobiDBLite consensus disorder prediction 259 293 - -
Lele55g1265 293 MobiDBLite consensus disorder prediction 80 113 - -
Lele55g1265 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 228 IPR013083 -
Lele55g1265 293 Pfam Ring finger domain 168 213 IPR001841 -
Lele55g1265 293 ProSiteProfiles Zinc finger RING-type profile. 169 213 IPR001841 -
Lele55g1265 293 SUPERFAMILY RING/U-box 150 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1265 Lele-ChrLele55 19174544 19177030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1265 150 218 C3H Transcription Factor Family AT5G15820 42.857 2.88e-12 64.3