Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1260 ATGGGGAGGGCTCCTTGCTGCGACAAAGCCAACGTGAAGAAAGGGCCATGGTCGCCGGAGGAAGACGCCAAACTCAAAGCTTACATCGAACAGAACGGCACCGGCGGCAACTGGATAGCGCTTCCTAACAAGATAGGACTTAAGAGATGTGGGAAAAGCTGTCGTCTGAGATGGTTGAATTATCTTCGCCCCAACATCAAGCATGGGGGCTTCTCAGAAGAAGAAGACAACATAATTTGCAGCCTTTATGTTAGTATTGGAAGCAGGTGGTCTATAATAGCGGCGCAATTACCAGGAAGAACCGACAATGATATAAAGAACTACTGGAACACCAGGCTGAAGAAGAAACTTCTGGGGAAGCAGCGTAAGCAACAAGAAGCCCAAGCTCACCGAGCTAATAACACGTTCAAGCAACAACTTAAGAGACAGCAGACGAATAATTTGGTGCTCATGAACCAAACTCCTCCTTCTTTGTCTACTACGCTTCAGCCTTCGATCCAAGAGCCCTACGATCTCAACAACAACCTAAGAAACATTTTAACCAAACTTGATGGAAGATTCTCCCCTTATGATCATCTCCCTCATCATCAATACCCATATGAATGTGACCCTTTCTTCTTCCCTCCACAAGACCAGTCATCATATCCAGTTCCAAACTCATCAGTGATAAACGATTGCAGCACTTCGAACGTGTTTGAAGGATTTCAAATTGAAAACTTGAAGAGTAATTATTTGAGCCAGATGGGGATGGATGGATTTCAGAGTTACAGTGGTGGGGTAATGGAGTCGTCGTCGACGGCCACCACCACTTCACCGGAAAGTAGCAGTTGGACAGACATGAGCACTCTGCTAAATTACTCTCCTAATAACATGGTTTCCGAATACCAAGAAATAATGTTGCCTCAAGATGTTGCTTTCGATGAGCCTGCTGCCTACTTAAGATGCAATAACTTCTCTGAATTTTGTACTACTCCTTACATCAAACCCTAA 990 0.4475 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEQNGTGGNWIALPNKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKQQEAQAHRANNTFKQQLKRQQTNNLVLMNQTPPSLSTTLQPSIQEPYDLNNNLRNILTKLDGRFSPYDHLPHHQYPYECDPFFFPPQDQSSYPVPNSSVINDCSTSNVFEGFQIENLKSNYLSQMGMDGFQSYSGGVMESSSTATTTSPESSSWTDMSTLLNYSPNNMVSEYQEIMLPQDVAFDEPAAYLRCNNFSEFCTTPYIKP 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1260 329 CDD SANT 71 113 IPR001005 -
Lele55g1260 329 FunFam Transcription factor RAX3 70 146 - -
Lele55g1260 329 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lele55g1260 329 CDD SANT 16 62 IPR001005 -
Lele55g1260 329 SMART sant 13 64 IPR001005 -
Lele55g1260 329 SMART sant 67 115 IPR001005 -
Lele55g1260 329 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lele55g1260 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lele55g1260 329 Gene3D - 70 153 - -
Lele55g1260 329 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele55g1260 329 FunFam Transcription factor RAX3 7 68 - -
Lele55g1260 329 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lele55g1260 329 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lele55g1260 329 PANTHER OS09G0431300 PROTEIN 1 282 - -
Lele55g1260 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lele55g1260 329 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1260 Lele-ChrLele55 19122166 19123388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1260 1 128 MYB Transcription Factor Family AT5G65790 91.473 8.26e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele55g1260 Myb_DNA-binding 9.4e-13 CL0123