LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele55g1256	ATGGGTTTTCCTTCTGATTCTACTCCCTCAGACCTCGAGCTTGTTCTAGGGCTAGCAGGTTCCACTACTACTCCCAAGAAATTACCTTCCCCTAATAATCTCACTGTTACCAGTGGTGTTTGTGAGCCTTCTTTGACGTTGGCTCTCTCCGGCGACACTTACAAGATTGATGTGAATATCAAAGCTAATAATAATAATTGTGAGGAAACGCCTCTTGATCACTTGTCTCGCCAGACTTCTTCGCCTCACAGTATGGTTTCGTCCTTCTCCGGTGGTGGTAGGAGGGTGAAGAGGGAGAGAGATCTCAGCAGCGAGCTGGAGGCTGAGGCCGAGAGGGTTTCTTCCAGAGTCAGCGACGAAGATGAAGAAGGCACTAATGCCAGGAAGAAGCTCCGGCTCACCAAAGAACAATCTGCTCTCCTCGAGGAAAGCTTCAAAGAGCACAGCACTCTCAACCCTAAGCAAAAGCAGGCCTTAGCCAGGCAGTTAAATCTACGGCCTCGCCAGGTTGAAGTTTGGTTCCAGAATCGAAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGTGAGTTTTTGAAGAAATGTTGTGAGACGCTGACGGATGAGAACAGGAGGCTGCAGAAAGAGCTGCAAGAGCTGAAGGCACTGAAGCTATCTCAGCCGTTGTACGTGCCGATGCCAGCGGCGACGCTCACCATGTGCCCGTCTTGCGAGAGGCTGGGAGGCGGCGTCGGGGACGCCGTCGTCGGAGCTTCCAATAAGACCCCATTCTCCATGACTCCCAAGTCGACTCATCACCTGTACAACCCCTTCAACAACCCTTCTGCAGCATGTTGA	840	0.5167	MGFPSDSTPSDLELVLGLAGSTTTPKKLPSPNNLTVTSGVCEPSLTLALSGDTYKIDVNIKANNNNCEETPLDHLSRQTSSPHSMVSSFSGGGRRVKRERDLSSELEAEAERVSSRVSDEDEEGTNARKKLRLTKEQSALLEESFKEHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLSQPLYVPMPAATLTMCPSCERLGGGVGDAVVGASNKTPFSMTPKSTHHLYNPFNNPSAAC	279

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele55g1256	279	Pfam	Homeodomain	128	182	IPR001356	GO:0003677
	Lele55g1256	279	SUPERFAMILY	Homeodomain-like	126	192	IPR009057	-
	Lele55g1256	279	MobiDBLite	consensus disorder prediction	73	131	-	-
	Lele55g1256	279	Coils	Coil	190	220	-	-
	Lele55g1256	279	CDD	homeodomain	128	185	IPR001356	GO:0003677
	Lele55g1256	279	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14	30	261	-	-
	Lele55g1256	279	ProSitePatterns	'Homeobox' domain signature.	159	182	IPR017970	GO:0000981\|GO:0006355
	Lele55g1256	279	FunFam	Homeobox-leucine zipper protein 18	112	189	-	-
	Lele55g1256	279	Gene3D	-	132	182	-	-
	Lele55g1256	279	Pfam	Homeobox associated leucine zipper	184	218	IPR003106	GO:0006355\|GO:0043565
	Lele55g1256	279	MobiDBLite	consensus disorder prediction	93	131	-	-
	Lele55g1256	279	MobiDBLite	consensus disorder prediction	73	88	-	-
	Lele55g1256	279	ProSiteProfiles	'Homeobox' domain profile.	124	184	IPR001356	GO:0003677
	Lele55g1256	279	SMART	HOX_1	126	188	IPR001356	GO:0003677
	Lele55g1256	279	Coils	Coil	96	123	-	-
	Lele55g1256	279	SMART	halz	184	227	IPR003106	GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele55g1256	Lele-ChrLele55	19082153	19083331	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele55g1256	1	279	Homeobox Transcription Factor Family	AT4G37790	59.603	1.94e-95	280

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Lele55g1256		Homeodomain	1.4e-16	CL0123