Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1241 ATGGAAATTGCCTCCGCCATGTACTCCACCAACGAATTGAATTATCAGGGCATGGAGGATTCCACTTTGTTTGAGCAGTTCCCCATAGATTATTTCGATGGCCTTGATTTCCAATCCTTGGTCTCTGACAGTTATTCCTGTTATGAGCGTCCCAATAACTCCAAGAGAAAACTGAATCCTCATTCTAGTATTGCCACACCGGCACCAACACTCAAGACCAATAACTCTGCTTCTGCTTCCAATTCTTTATCCACACTCATTTCTTTTGACAACTTCAATATGAAGCTCGAAACCCTGAATAATGACAACGTTTTCAATTTTGCGTCTTTAAGCTCTCATCAAGGTGCATACTATGAAGACATCAATTTCGTACAACAAGCTCAGAAACTGACCAACGTGACGAGAAATCCACTCCGAGCTCAAGATCACGTCCTGTCCGAAAGACGACGAAGGGAAAAGCTCAACAAGAAGTTCATCGCTCTCTCCTCCATCATTCCTGGCCTCAAGAAGATGGACAAGGCGTCAGTGTTGGGAGATGCTATAGAGTACGTAAAACAGCTGAAAGAACGGCAAAGGATTCTGGAAGAACAACTGGCCATGAGAACAAAGGAATCTGCAGTCCTAACAAGAAGATCCATTCTCTCTGCCGACAATGATAACTCGCTGCCCAGGGATGAAATTTCCGACCAGCCTCTTGCAGAAATCGAAGCCAGAGTTTTGGGTAAAGATGTGCTCATCAGAATCCAATGCGAGAAACACAAGGAGTGTGAGGCTAAAATTCTGAGAGAATTACAAAACCTTGGTCTCACTGTTCAAAGCAGTAGCATCTTGCAATTTGGCGAAACCACCCTATGTATAACTATCATAGCTCAGTATGACAGCAAAGGATTTCGTGGCAAGTCTGAGGAAGGCATTGACATTATTGGATAG 930 0.4366 MEIASAMYSTNELNYQGMEDSTLFEQFPIDYFDGLDFQSLVSDSYSCYERPNNSKRKLNPHSSIATPAPTLKTNNSASASNSLSTLISFDNFNMKLETLNNDNVFNFASLSSHQGAYYEDINFVQQAQKLTNVTRNPLRAQDHVLSERRRREKLNKKFIALSSIIPGLKKMDKASVLGDAIEYVKQLKERQRILEEQLAMRTKESAVLTRRSILSADNDNSLPRDEISDQPLAEIEARVLGKDVLIRIQCEKHKECEAKILRELQNLGLTVQSSSILQFGETTLCITIIAQYDSKGFRGKSEEGIDIIG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1241 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 211 IPR036638 GO:0046983
Lele55g1241 309 PANTHER BHLH TRANSCRIPTION FACTOR 18 294 - -
Lele55g1241 309 Pfam Helix-loop-helix DNA-binding domain 141 188 IPR011598 GO:0046983
Lele55g1241 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Lele55g1241 309 Gene3D - 135 198 IPR036638 GO:0046983
Lele55g1241 309 Coils Coil 184 204 - -
Lele55g1241 309 SMART finulus 144 193 IPR011598 GO:0046983
Lele55g1241 309 MobiDBLite consensus disorder prediction 50 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1241 Lele-ChrLele55 18979808 18980969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1241 134 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 51.515 7.33e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele55g1241 HLH 5.1e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0431 50 2452972 2454245 Lele55g1241 55 18979808 18980969 CCT
Lele51g0412 51 2379193 2380656 Lele55g1241 55 18979808 18980969 CCT
Lele52g0429 52 2524146 2527913 Lele55g1241 55 18979808 18980969 CCT
Lele53g0243 53 2015061 2016371 Lele55g1241 55 18979808 18980969 hybridization
Lele54g0249 54 2091292 2092448 Lele55g1241 55 18979808 18980969 hybridization