Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1240 ATGGACCCATCTGCAGCCACCACCTGGTTGTCTGATCTGGAAATGGATGATTACGATTTGTTCCCAATGCAATGCCACCTGATGAACGGTATCGATGATGATCAGTTTATTTCACATGACATAGCCAGTGTTCTTCAGGGACAATCGTATTTGCAGCCATCTTTGTCTTCTGAGAGCTATTCTTCGTATAATCCATGCACTGCTGAAATTAGCCTTGATGGGGCTTCTTTGCAGTTCAAATCCACCATTTCTGAACCTTCATCATCTTCTTCTCCTCAATTCCTGTCTTTTGATAACTCTAATAATTTCACTTCTTCTTCCCCTATCAACTGCACCAACCTCTTTAACAGTTTTGACTCAGCAACGACCTTGAAGCCATCAAACAAGGATCATGTACAGTATTTCTCAGCTCAATCCCCTAATAATGGGTTTTCCCAAAATCACAACTTTGAACCCAACTCCACCCAAAGCATCATCAATAGGCCTATCCCTCACGTCCGTGATCACATCATGGCTGAGAGAAAACGAAGAGAAAAGCTCAGCCAGAGCTTCATTGCTCTTTCAGCCCTTGTCCCTGGCCTCAAAAAGATGGATAAGAATTCGGTGCTTGGGGATGCTATCAAGTACGTGAAGGAGCTGAAGGAGAGACTGACATTGCTGGAAGAACAAAACAAGAAAAGAAGGGTTGAATCAGTGGTTAGAGTAAACAAATCGAAACTGTACGTGGATGATGATGATGATGATGAAGAAGAAGGAGTTGCTCAAGTGGAAGCAAGAGTGTTGGAGAAGGACGTACTGATTCGGATCCACTGCCAGAAACACAAGGGACTTCTGATGAAGATACTTGCGGAGATTCAGAATCTTCATCTTTTTGTTGTCAACAGCAGCGTCTTGCCATTCGGGGATTCCAATCTTGACGTCACCATTATTGCTCAGATGGCGGAAGATTGCAGCTTGACGATGAATATATATTACGAACGAAAATGGAATCGATGGAGGAATCATGGGAAAGCTTGTTCCAGGATTTGTTTTGCTTTTGGCGAGGCTCATGAATTAGGCAGTGAATCACATGAGAACTTTGAAAGTTGTTGGAATAACACTGAAAATGGCATCATCACGAGCAATCCTTTGACTTCATCAAAATCTGTCAATAGCCAACATCTCACGTTTTCCCATGATTCTGTCTTGATGCTACAAGACAAGGCTTATTATTTTGATGATCCTTCAAATGGGTACTTGCAGAGTCAAACAAATAGTATTAAAGAAAGAGACAAACCAGAGGGTAGAAATTCTCGAGTACAAGATCACTTACTTGCCGAGAGAATGAGGAGAGGAAAGATCTCCCAGCACTTCATTGCCCTTTCTGCCCTAATTCCTGGCCTCAAAAGGGCGGACAAGGCTTCTGTGCTGGAGGGAGCTATAAAGCACGTGAAGCAGCTTCAAGAACAAGTGAAAACACTGGAAGAAGAACAGACCAATAAGAAGAAGAAGACTGGAGAATCTGTGGTGTTTGTGAAGAAGTCTCAGCCAATATCTACGACGTCGTTTAATGATTCATCAAAATGTAATACAAGAGTAGCAGAAGCAGATGTTGAAGCAAGGGTTTCAGAGAAGAACGTGTTGATTCGAGTGCAATGCGAGAAACAAGAAGGAATAATGGTGAAGACAATCAAGGAGATTGAAAAACTCCACTTGTCTGTGGTAAATAGCAGTGTGATGCCCTTTGGAAGATCCATTCTCGACATCACCATCATCGCTGAGGTATTACGTTTTGTCATTAATGCATAA 1788 0.4234 MDPSAATTWLSDLEMDDYDLFPMQCHLMNGIDDDQFISHDIASVLQGQSYLQPSLSSESYSSYNPCTAEISLDGASLQFKSTISEPSSSSSPQFLSFDNSNNFTSSSPINCTNLFNSFDSATTLKPSNKDHVQYFSAQSPNNGFSQNHNFEPNSTQSIINRPIPHVRDHIMAERKRREKLSQSFIALSALVPGLKKMDKNSVLGDAIKYVKELKERLTLLEEQNKKRRVESVVRVNKSKLYVDDDDDDEEEGVAQVEARVLEKDVLIRIHCQKHKGLLMKILAEIQNLHLFVVNSSVLPFGDSNLDVTIIAQMAEDCSLTMNIYYERKWNRWRNHGKACSRICFAFGEAHELGSESHENFESCWNNTENGIITSNPLTSSKSVNSQHLTFSHDSVLMLQDKAYYFDDPSNGYLQSQTNSIKERDKPEGRNSRVQDHLLAERMRRGKISQHFIALSALIPGLKRADKASVLEGAIKHVKQLQEQVKTLEEEQTNKKKKTGESVVFVKKSQPISTTSFNDSSKCNTRVAEADVEARVSEKNVLIRVQCEKQEGIMVKTIKEIEKLHLSVVNSSVMPFGRSILDITIIAEVLRFVINA 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1240 595 PANTHER BHLH TRANSCRIPTION FACTOR 52 322 - -
Lele55g1240 595 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 229 IPR036638 GO:0046983
Lele55g1240 595 Pfam Helix-loop-helix DNA-binding domain 434 481 IPR011598 GO:0046983
Lele55g1240 595 Pfam Helix-loop-helix DNA-binding domain 169 213 IPR011598 GO:0046983
Lele55g1240 595 Gene3D - 428 502 IPR036638 GO:0046983
Lele55g1240 595 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 431 480 IPR011598 GO:0046983
Lele55g1240 595 Gene3D - 166 230 IPR036638 GO:0046983
Lele55g1240 595 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 432 494 IPR036638 GO:0046983
Lele55g1240 595 CDD bHLH_AtNAI1_like 165 238 - -
Lele55g1240 595 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Lele55g1240 595 Coils Coil 203 230 - -
Lele55g1240 595 Coils Coil 470 497 - -
Lele55g1240 595 SMART finulus 437 486 IPR011598 GO:0046983
Lele55g1240 595 SMART finulus 170 219 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1240 Lele-ChrLele55 18966698 18972195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1240 422 587 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 51.445 1.02e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele55g1240 HLH 5.6e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0403 49 2338478 2339860 Lele55g1240 55 18966698 18972195 CCT
Lele53g0246 53 2041857 2043369 Lele55g1240 55 18966698 18972195 hybridization
Lele54g0250 54 2103808 2105318 Lele55g1240 55 18966698 18972195 hybridization