Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1236 ATGGGTACAGAGAATGGCCTTCTCTCCATGACCCAGATCCAAAAATTGTCACAATCCCAATACAACCACCATCCCAATTACCTTCTTCTTCAACCTCATCACCTCCCAAACCCTAGCTCCTCCTCTTCTTCTTCAACCTCCTGCTGGATCATGTGGAACCCTAGGGATCCTCAGGAAGAAGATGACTCGTGGGAGGTTAGAGCCTTTGCGCAGGACACCACCAACATCATGGGCACCACTTGGCCTCCCAGGTCCTACACCTGCACTTACTGTCGAAGGGAGTTCCGTTCAGCCCAAGCTCTTGGCGGCCACATGAACGTTCACCGCCGTGACCGTGCCCGTCTCCACCACCACCTGCAACACCACCAGCCAACACCGTCTGCTGCTGCTGCTTCCGTTCATCACAGCAACCTAATCTCATCGCCTCATCATCATCATCAAGAGCTTGTTGCAAACAACGGCAGATTCTTTCTCTACCGTTTGCCAAGCCCTGACGGGATCGGAAACTTGACTGGTACTAGTAATACTACTACTAATCCTCTTGCTTCTTCTTCTTTGAATGCATGTGGAGAATCGGTATCACCCACCAGGCTTCTCTCCATTATGCCCTACCCACCGAGCAACTTTGTGTCAACTAGCACCCCCTCCTATGATTTTCAAGCGGAGCGGCGGCCTGCTGGATTCATCAATTCTTCTTGCTGTGATTCTACCGAAGTGGAACAGCCCGCAACCTCCTTGTTTCCCGGCAACGGCGGCCACGAGGAGCTTGATCTAGAGCTCCGGCTGGGGCACAGACCACCACCAAGCAGAAATAAAAAACGGTGTGTAGAGGATAACAGTAACTAG 846 0.5201 MGTENGLLSMTQIQKLSQSQYNHHPNYLLLQPHHLPNPSSSSSSSTSCWIMWNPRDPQEEDDSWEVRAFAQDTTNIMGTTWPPRSYTCTYCRREFRSAQALGGHMNVHRRDRARLHHHLQHHQPTPSAAAASVHHSNLISSPHHHHQELVANNGRFFLYRLPSPDGIGNLTGTSNTTTNPLASSSLNACGESVSPTRLLSIMPYPPSNFVSTSTPSYDFQAERRPAGFINSSCCDSTEVEQPATSLFPGNGGHEELDLELRLGHRPPPSRNKKRCVEDNSN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1236 281 SMART c2h2final6 86 108 IPR013087 -
Lele55g1236 281 Pfam C2H2-type zinc finger 86 110 - -
Lele55g1236 281 PANTHER OS07G0101800 PROTEIN 58 266 - -
Lele55g1236 281 SUPERFAMILY beta-beta-alpha zinc fingers 83 113 IPR036236 -
Lele55g1236 281 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Lele55g1236 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Lele55g1236 281 MobiDBLite consensus disorder prediction 262 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1236 Lele-ChrLele55 18943208 18944053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1236 51 267 C2H2 Transcription Factor Family AT4G17810 39.819 2.68e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele55g1236 zf-C2H2_6 3.4e-07 CL0361