Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1234 ATGGATTCACGGGAACCGCCTCAGCCTCCTCACCCGTCGCAGCTACAGTCGATGGCACAAGCACAACCACCGTCGACGGTGCCAAGCATGATGATGGGACCGCCTTCGTATGGCTCTGCCATGCCGAACCCGAACACATCTCCCATGATCAGCCCCAATTCGACGGCCGCGATGATGGCCCCTGCCACCGCCGCACGATTCCCTTTCAACACCGTGGTTCCACAACCCCCTGCTCCGTCTAAACCTATGGAGCATCTGAACAACAATGTTAGTCCTTTCGATGGGTCATCGTCCGCGATGAGGCCATGTGGGTTTAATAGTGATTCTACGAAGAAGAAGAGAGGCCGGCCGAGGAAGTATTCGCCGGATGGTAACATTGCTTTGGGTTTGTCTCCCACGCCCATGTCTACTTCTGCTGGTCAAGGAGGTTCGACTGGTACACCTTCGACGGAACCTGGAGCGAAGAAGCACAGGGGAAGGCCACCGGGTTCTGGAAAGAAGCAGCTGGATGCTCTTGGAGCTGGCGGTGTTGGTTTTACTCCGCACGTAATATTGGTAAAAGCCGGTGAGGACATTGCTGGAAAGATTGTGGCCTTTTCACAGCAAGGGCCTAGGACAGTTTGTATTCTTTCGGCAATTGGTGCAATCAGCAATGTTACCCTTAGACAGGCAGCAATTTCTGGCGGTACTGTGCAATATGAGGGCCGATTTGAGATCATATCTCTATCAGGTTCTTTCCTGCCATGTGATGATAATGATCGTAACAGAGCAGGTGGTTTTAGCGTGTCTCTTGCGGGATCAGATGGTAAAGTTTTAGGAGGTGGAGTTGCTGGAATGCTAATCGCCGCATCACCAGTGCAGGTCATTGTGGGTAGCTTTATTGCTGATGGGAAAAAGTCAAGCTCAAATATTCAGAAATCAGGGGCTTCTTCAGCACCAGGCTCCCAAATGTTAAATTTTGGTGCATATACAACTTCTACCAGCCCTACCTCTCAAGGCCCTTCATCTGAGTCCTCTGAAGAGCATAACAACAATAATGGTGATTTTAATAGGGGACCTGCACTCTACAATAATAATAATAATACTAACCAGCCCATTCACAATATGCAGATGTATCATCCTCAACTATGGGCTGGTCAAACCCAGCAGTGA 1152 0.5 MDSREPPQPPHPSQLQSMAQAQPPSTVPSMMMGPPSYGSAMPNPNTSPMISPNSTAAMMAPATAARFPFNTVVPQPPAPSKPMEHLNNNVSPFDGSSSAMRPCGFNSDSTKKKRGRPRKYSPDGNIALGLSPTPMSTSAGQGGSTGTPSTEPGAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVKAGEDIAGKIVAFSQQGPRTVCILSAIGAISNVTLRQAAISGGTVQYEGRFEIISLSGSFLPCDDNDRNRAGGFSVSLAGSDGKVLGGGVAGMLIAASPVQVIVGSFIADGKKSSSNIQKSGASSAPGSQMLNFGAYTTSTSPTSQGPSSESSEEHNNNNGDFNRGPALYNNNNNTNQPIHNMQMYHPQLWAGQTQQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1234 383 Pfam Plants and Prokaryotes Conserved (PCC) domain 181 293 IPR005175 -
Lele55g1234 383 MobiDBLite consensus disorder prediction 39 55 - -
Lele55g1234 383 MobiDBLite consensus disorder prediction 1 55 - -
Lele55g1234 383 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 54 344 IPR039605 GO:0003680
Lele55g1234 383 CDD DUF296 180 293 IPR005175 -
Lele55g1234 383 SUPERFAMILY AF0104/ALDC/Ptd012-like 179 294 - -
Lele55g1234 383 SMART AT_hook_2 111 123 IPR017956 GO:0003677
Lele55g1234 383 SMART AT_hook_2 155 167 IPR017956 GO:0003677
Lele55g1234 383 Gene3D - 181 307 - -
Lele55g1234 383 ProSiteProfiles PPC domain profile profile. 175 314 IPR005175 -
Lele55g1234 383 MobiDBLite consensus disorder prediction 298 367 - -
Lele55g1234 383 MobiDBLite consensus disorder prediction 69 170 - -
Lele55g1234 383 MobiDBLite consensus disorder prediction 82 105 - -
Lele55g1234 383 MobiDBLite consensus disorder prediction 130 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1234 Lele-ChrLele55 18901148 18906399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1234 93 383 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 47.337 3.50e-73 233