Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1231 ATGCCAGTTCCACTTGCCCCTTACCCTAAACCCCCAGCTCCATATACGCCTCCAGCTAATGTTGGAGCAACATCTGTGTGCTGTGCTGTTTGCAATTCAGTCACTGTAGTGCCGCCTCCTGGCACAGAAATGGCTCAGTTGGTTTGTGGAGCCTGCCACACCTTACTCATGTACATACGCGGGGCGACAAGCGTGCAATGTTCCTGCTGTCACATTGTGAATTTAGCTCTAGAAGCAAATCTAGTGGCACGTGTCAATTGTGGCAACTGTAGGATGCTACTGATGTACCAATATGGAGCAAGATCTGTTAAATGTGCAATCTGCAATTTTGTAACATCTGTTGGGGCCACAGGAAGCACAATTGAGCAGAAGTTCAGCGCCTAA 384 0.4844 MPVPLAPYPKPPAPYTPPANVGATSVCCAVCNSVTVVPPPGTEMAQLVCGACHTLLMYIRGATSVQCSCCHIVNLALEANLVARVNCGNCRMLLMYQYGARSVKCAICNFVTSVGATGSTIEQKFSA 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1231 127 SUPERFAMILY Multiheme cytochromes 27 108 IPR036280 -
Lele55g1231 127 PANTHER PROTEIN LSD1 21 116 IPR040319 -
Lele55g1231 127 Pfam LSD1 zinc finger 49 73 IPR005735 -
Lele55g1231 127 Pfam LSD1 zinc finger 87 111 IPR005735 -
Lele55g1231 127 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 46 75 IPR005735 -
Lele55g1231 127 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 85 114 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1231 Lele-ChrLele55 18878555 18880553 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lele55g1231 zf-LSD1 8.4e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0445 50 2545717 2548717 Lele55g1231 55 18878555 18880553 CCT
Lele51g0427 51 2462470 2467478 Lele55g1231 55 18878555 18880553 CCT
Lele52g0443 52 2622005 2625353 Lele55g1231 55 18878555 18880553 CCT