Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1230 ATGGATGAGAAGTCCAGAAGACCTGATGAGGAGTTGAAAGTGCTTGGGCAAAACTCCATCAATCAAATTTTGGATGTGTACGTATGGGACATGGACGAGACCCTTATACTGCTTAACTCTTTGCTGAAGGAGTCCTATGCAGAGGCTTTTAATGGCTTGAAGGATGTCCAGAAGGGTGTGGAGATTGGGAAAAATTACAATAAGCCATTTCTTGATATCTTGAGCCAATATGATGATGGAAGGGACCTCTCTAATTATGACTTCAACCAAGATGGTTTGGGTTCTTCCCATGATGACGATGACAACAAAAGAAAGCTTGCATATAGGCTTCGAGTTATAGCCCAAAAGTACATATTGGGTTTAAAGAATCTCTTGGACCAAGAGACGGTGACTCTCTGGGATCAATTGTATGAGACAACTGATGCATATACTGATAGATGGCTTTCCTCAGCACGGGCATTTCTGAAGGAGTGTATGGATAAAAATAAGGTTGCGGATTCCTCTGTTGCGCTTCCTGAGACCAGTGCTGACTCAACCAATATGACACGCCAGCATGTTAACGTTTTAGTGACATCTGGATCACTGATACCGACCCTTAATGGACTTCTCATGCCAAAATTGATTACAATTCTTAATAATTTAACACATTTCGTTGCAGTTTATAGCTCATGGGACGTGGGGAAAGTTCAGTGCTTCCGATGGATCAAGGAGCGTTTTGACCATCCCAATGTCCGTTTTTGTGTGATTGGAGATGGATGGGAAGAATGTGAAGCGGCAAAAACCATGAGATGGCCATTTGTGAAGATTGATCCACGGCCAGGCACACCATACAGGTTTCCTGGGCTCACGTTAAGAACAGTGAGCCACTACTTTTCTGTGGTGTATGGAAGTCTGAATAATGAGAACGATGATGAAGAATAA 921 0.4278 MDEKSRRPDEELKVLGQNSINQILDVYVWDMDETLILLNSLLKESYAEAFNGLKDVQKGVEIGKNYNKPFLDILSQYDDGRDLSNYDFNQDGLGSSHDDDDNKRKLAYRLRVIAQKYILGLKNLLDQETVTLWDQLYETTDAYTDRWLSSARAFLKECMDKNKVADSSVALPETSADSTNMTRQHVNVLVTSGSLIPTLNGLLMPKLITILNNLTHFVAVYSSWDVGKVQCFRWIKERFDHPNVRFCVIGDGWEECEAAKTMRWPFVKIDPRPGTPYRFPGLTLRTVSHYFSVVYGSLNNENDDEE 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1230 306 PANTHER EYES ABSENT 18 64 IPR028472 GO:0004725
Lele55g1230 306 SUPERFAMILY HAD-like 28 277 IPR036412 -
Lele55g1230 306 Gene3D - 25 275 IPR038102 -
Lele55g1230 306 TIGRFAM EYA-cons_domain: EYA conserved domain 64 287 IPR006545 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1230 Lele-ChrLele55 18874788 18876450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1230 24 305 Protein tyrosine phosphatase (PTP) family AT2G35320 51.987 2.34e-105 308
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0256 53 2125729 2127389 Lele55g1230 55 18874788 18876450 hybridization
Lele54g0260 54 2200223 2201923 Lele55g1230 55 18874788 18876450 hybridization