Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1228 ATGGGTTGCACTGTAAGGGAAAAGCACCTCCGAGCGAATCGGAGGCCTCGATCCTCCAAGCCCGATATGGATTCCTGTTGTTATCTCGACAAGGATTCCATCTCCAAATCTATGCTGGAATCAAGCATGAAGCCTTTGGAAAACCATCTCGCTCTCAACGATTCTTCTCAAAATCTAAATTCCAACTCTAATCCTACCCTTAACCCTAATTTCTCCCTTAATATTGAGGAAACCGGATGGGGTTACTGCACCGAAGAACAATTAGAAGAAATTCTATTAAAAAACTTGGAATATTTATATAATGAAGCTGTATCAAAGCTTGTTGCGTTGGGCTACGACGAGGACATTGCTATCAAAGCAATATTGCGAAATGGGCACTGTTATGGTGGAATGGATGTGATAACCAATATATTACATAATTCGTTGGCTTATTTGAATAGTAACTGTAGTAGTACTAGTACTAGTATTAATGGCAATTCCGATGAGTCCGATCCTGTTTTCTCTGACTTGAGGCAGTTGGAGGAGTACTCTCTGGAAGGTATGGTCGGTTTGCTACAACAAATCAGGCCGCATTTGAGTAAAGGCGATGCTATGTGGTGTTTGCTTATGAGTGATCTTCATGTAGGACGGGCAAGTGCTATGGAAATTCCAGTGCTTCCTGCTCCAGGTAATGGTTGTCCAGCTCCTAGTGCCTCTGAGGCTGTTAGCAATTCAGTTGGTGTTTTGGCCCCTGCCCTGTGTAGGTTTCATGGGGGTTGGGGATTTGGAAATGGGGGAGGCTCAGATCTCCCCTTCAATGAGTTCTTCTCTTATAGTGCAGAGATGAATTTACAAAGAGATATTGAACTTCCCAAAAGGTTTAATCTTTCTCCTTCAATGAAGTCTTTATTGAGAAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCAAATTCAAAACAATTGCAGGCACAGGCTAAGGCCTCTCCTGGCGCTAGCACTTTGTCAAGCTTGGAATCTCCAGCTGTATCTGGGACTAATGTCCCAACTGAGCAGTCTGGGAATTCTCAGAATCTGAATAACCATGATGCCGTGAACTCAGTGTTGAGCAAATTCCGTGATCTGAATCTTGATGAGAATTTGGAGTTTGTGACAGATGATCAGAAAGATGAGGTAATTGTCACTCTATTTCATCAGATTAAGGATCTTGAGAAACAGGTAAAGGAGCGAAAAGATTGGGCCCATCAGAAGGCAATGCAGGCCGCAAGAAAGCTTAGCAATGATTTGACTGAGCTGAAAATGTTGAGGATGGAAAGAGAGGAGACTCAGAGATTGAAGAAAGGGAAACAGGCGCTTGAGGACACAACCATGAAAAGACTCTTAGAGATGGAGAATGCTTTAAGAAAGGCCAGTGGTCAAGTGGACCGTGCAAATGCAGCTGTGAGATTGCTCGAGACAGAGAATGCAGAAATTAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAATCAGTCACAACTTGCTTGCAAGCTGCAAAGAGGGAGAAAAAGTGCATGAAGAGGCTTGTAGCTTGGGAAAAACAGAAAGCTCAGCTACAGCAAGAGATTTCAGCTGAGAAAGAGAAGATATTGGAGATGCAAGAAGAATTGGTCCGGATTAAACAGCGTCAAAAAGATGCTGAGGTCAAGTGGAGGGAGGAGTTGAAGGCTAAAGAGGAAGCCTTAGGATTAGTTGAGGAGGAGCGACGCGCTAAGGAAGCCGCGGAGGCTAATAATAAGCGGAAGCTGGAAGCTTTGCGCCTAAAGATAGAGATAGATTTCCAGCGCCACAAGGATGACCTCCTTAGACTTGAGCAGGAGCTCTCACGCTTAAGAGCATCTGTTCAGTCTGCTGAGTTTCAAAATCAATCTAACACTTCACTTACAAGCGAATCTGAGGGTGCAAAGCCCCAAAGAGAGACAATTGCAAAGATGCTTCAAGAATTAGATAAACTGGAGGCATTTTCAGATAAACAAGTAAACTGTGATAGGGAATGCATAATATGCATGAAAGATGAAGTCTCTGTTGTTTTCTTGCCTTGTGCTCACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGGCTGAGAAAGGGCAGAGCTGCATGTCCTTGCTGTCACGTTCCCATTGAGCAGAGGATTCGCGTATTTGGGGCAAGTTCGTAG 2187 0.438 MGCTVREKHLRANRRPRSSKPDMDSCCYLDKDSISKSMLESSMKPLENHLALNDSSQNLNSNSNPTLNPNFSLNIEETGWGYCTEEQLEEILLKNLEYLYNEAVSKLVALGYDEDIAIKAILRNGHCYGGMDVITNILHNSLAYLNSNCSSTSTSINGNSDESDPVFSDLRQLEEYSLEGMVGLLQQIRPHLSKGDAMWCLLMSDLHVGRASAMEIPVLPAPGNGCPAPSASEAVSNSVGVLAPALCRFHGGWGFGNGGGSDLPFNEFFSYSAEMNLQRDIELPKRFNLSPSMKSLLRRNVAMFAAGFRANSKQLQAQAKASPGASTLSSLESPAVSGTNVPTEQSGNSQNLNNHDAVNSVLSKFRDLNLDENLEFVTDDQKDEVIVTLFHQIKDLEKQVKERKDWAHQKAMQAARKLSNDLTELKMLRMEREETQRLKKGKQALEDTTMKRLLEMENALRKASGQVDRANAAVRLLETENAEIKAEMEASKLSASESVTTCLQAAKREKKCMKRLVAWEKQKAQLQQEISAEKEKILEMQEELVRIKQRQKDAEVKWREELKAKEEALGLVEEERRAKEAAEANNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLRASVQSAEFQNQSNTSLTSESEGAKPQRETIAKMLQELDKLEAFSDKQVNCDRECIICMKDEVSVVFLPCAHQVMCASCSDEYGLRKGRAACPCCHVPIEQRIRVFGASS 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1228 728 MobiDBLite consensus disorder prediction 317 355 - -
Lele55g1228 728 Pfam Zinc finger, C3HC4 type (RING finger) 670 719 - -
Lele55g1228 728 ProSiteProfiles Zinc finger RING-type profile. 673 714 IPR001841 -
Lele55g1228 728 Pfam Family of unknown function (DUF6592) 95 214 IPR046527 -
Lele55g1228 728 PANTHER OS05G0141500 PROTEIN 1 723 IPR046934 -
Lele55g1228 728 MobiDBLite consensus disorder prediction 1 24 - -
Lele55g1228 728 Coils Coil 509 557 - -
Lele55g1228 728 SUPERFAMILY RING/U-box 661 720 - -
Lele55g1228 728 Coils Coil 562 592 - -
Lele55g1228 728 Coils Coil 453 494 - -
Lele55g1228 728 SMART ring_2 673 713 IPR001841 -
Lele55g1228 728 Coils Coil 601 628 - -
Lele55g1228 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 725 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1228 Lele-ChrLele55 18856901 18861345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1228 673 724 C3H Transcription Factor Family AT1G73950 42.308 1.51e-06 49.3