Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1213 ATGCATTTTCTTTTCAGCCAAGCTCAAATATGTGCATGCATGCGACAGGGGAACGATGCTAAACCAGCTATGGTTTGCACTGCTAACGATATACAGGAGTGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTCCTTGATGGAGACAGCAGTTCTGCTTCGGAGATAAGAACAAAGCTTGAGGCCATGGACTATATTGTTTCTACATTCTGTGATGAGAATGAAGCCTTGTCAGCAATCTCAAGCAAACCTGAAGGCTTCCATGTTGCCATAGTGGAGGTTAGTACCAGCAGCCCGCGAAGTTTCAAAATTCTTGAGTATGCTAAAGACTTGCCCACCATCATGACTTCAAACAATCACTGCTTGAGCACCATGATGAACTGTGTAGAGCTTGGTGCAGTTGAGTTCCTAAGCAAACCACTCTCTGAGGAAAAACTCAGGAACATCTGGCAGCATGTTGTTCACAAGGCATTCAACACTGGGACAAGTGTCCTGCCTAAATCACTAGAACCTGTCAAAGAATCTGAGGTATTGCAGCTTCAAACAGACGTTGGAGAGCATGGAAGTGTAAATTTAGAGGAGTCTAGGTTCAGTGATGGTGACCATGAGCAGTCTTCAGGAAGTGACAAGTACCCAGCTCCTTCGACTCCACAATTAAAACAGGGGGAAAGGTTAATGGACGATGGAGATTGCCAAGAACAAACTAACTGTTCAACAGAAAAGGAAAGTGAGGACCATGATGGGGAATCTAAATTTGTCGAAACTACATGTGGGGTTTTGAATCCTGAAGGTAATTGTCAACCAGTAAAACATGAAAAGGCTCTGAACATGGAGGATGAGAACCTTGCAAATGATTCTAAGAGTGAGAAAGTTGTTTCTCCACCTGTAAATGATAGTGTTCTCAGCAACATTGAAAGTGATACTGTATCTCCAAACAAAGCTGGTGTTCGTAGTGATTCCCGTCAAATCAAAACTAAGAAGAAGGTAGACTGGACACCTCAGCTGCACAAAAAGTTTGTGAAGGCAGTGGAACAATTAGGGGTTGATCAAGCAATTCCTTCTAGGATACTGGAGCTGATGAATGTGGAGGGCTTGACAAGGCATAATGTGGCGAGTCATCTTCAGATAAGTATGATGCATCAACAGTTTGTCCTACAGAAATATAGAATGCATAGGAGGCAAATCTTGCCGAAGGAAGATCGAAGATGGGTACAAAGTCCAGTTAAGGCTTTCCCTCCATATTATTCTAACTGCATCCCATCACCAGCGCCTGTGTATCCTTTCTGGGGACAATCTGGCAGTCAACCAGCCAGTATGCATGCTTGGGACCCACCTGGTTATCCCCCGTGGCATCGTGCTGAAACGTGGCACTGGAAGCCATATCATCGGATACATGCAGATGCGTGGGGTTACCCAGTGTTGTTAGCTCCTCAAAGTCCTTGTATTTCGTACTCACAAAATATACCTGGATGGCACAATGCTAATGCAGTTAATTATAGCGCAAGCAAGTCACAAAATTCCTGTGAATATCATCCAGCAGAAGATGTTGTTGACAAGGCAGTGAATGAGGCAATAAGCAAGCCATGGCTACCAATGCCTTTAGGCCTCAAACCGCCTTCCATTGATTGTGTGTTGACTGAGCTCTCTAGGCAAGGCATTTACACCATCCCTCCTTGCTCCAGGCATGCTAAACCCGAACCCAAAACCCAGTGA 1713 0.446 MHFLFSQAQICACMRQGNDAKPAMVCTANDIQEWKDFPKGLRVLLLDGDSSSASEIRTKLEAMDYIVSTFCDENEALSAISSKPEGFHVAIVEVSTSSPRSFKILEYAKDLPTIMTSNNHCLSTMMNCVELGAVEFLSKPLSEEKLRNIWQHVVHKAFNTGTSVLPKSLEPVKESEVLQLQTDVGEHGSVNLEESRFSDGDHEQSSGSDKYPAPSTPQLKQGERLMDDGDCQEQTNCSTEKESEDHDGESKFVETTCGVLNPEGNCQPVKHEKALNMEDENLANDSKSEKVVSPPVNDSVLSNIESDTVSPNKAGVRSDSRQIKTKKKVDWTPQLHKKFVKAVEQLGVDQAIPSRILELMNVEGLTRHNVASHLQISMMHQQFVLQKYRMHRRQILPKEDRRWVQSPVKAFPPYYSNCIPSPAPVYPFWGQSGSQPASMHAWDPPGYPPWHRAETWHWKPYHRIHADAWGYPVLLAPQSPCISYSQNIPGWHNANAVNYSASKSQNSCEYHPAEDVVDKAVNEAISKPWLPMPLGLKPPSIDCVLTELSRQGIYTIPPCSRHAKPEPKTQ 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1213 570 PANTHER TRANSCRIPTION ACTIVATOR GLK1 24 559 IPR044825 GO:0003700|GO:0045893
Lele55g1213 570 MobiDBLite consensus disorder prediction 223 251 - -
Lele55g1213 570 MobiDBLite consensus disorder prediction 182 251 - -
Lele55g1213 570 MobiDBLite consensus disorder prediction 287 318 - -
Lele55g1213 570 MobiDBLite consensus disorder prediction 189 206 - -
Lele55g1213 570 FunFam Two-component response regulator 322 396 - -
Lele55g1213 570 Pfam Myb-like DNA-binding domain 329 375 IPR001005 -
Lele55g1213 570 Gene3D - 41 162 - -
Lele55g1213 570 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 323 382 IPR017930 -
Lele55g1213 570 MobiDBLite consensus disorder prediction 283 321 - -
Lele55g1213 570 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 326 377 IPR006447 GO:0003677
Lele55g1213 570 SUPERFAMILY Homeodomain-like 324 381 IPR009057 -
Lele55g1213 570 SUPERFAMILY CheY-like 39 156 IPR011006 -
Lele55g1213 570 Gene3D - 323 395 - -
Lele55g1213 570 FunFam Two-component response regulator-like APRR2 40 165 - -
Lele55g1213 570 ProSiteProfiles Response regulatory domain profile. 42 154 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1213 Lele-ChrLele55 18760328 18765650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1213 24 560 Response Regulator Gene Family AT4G18020 49.220 1.35e-133 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele55g1213 Myb_DNA-binding 2.8e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0432 49 2531245 2536337 Lele55g1213 55 18760328 18765650 CCT
Lele53g0277 53 2276494 2281242 Lele55g1213 55 18760328 18765650 hybridization
Lele54g0276 54 2317141 2321343 Lele55g1213 55 18760328 18765650 hybridization