Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1208 ATGCATCCCCAACTCTCTCTTTTCCATAGTTGTTTTCTGCTTTTGTGTTCTGCCAAAACCATGTCTCTCTTTGCTTTGTGTTCTCTTCTTCTCACCACCACCACCTTGCTTTCCATGCAAAATCAGTCAGTAATCGACGCTGCGTCGTGTTCCGATTGTTTTGTATCTTCTCGAGCATCCTATTACCCAAACTCCGATGAACATGGAACAGATGTAGGTGCATGTGGGTTTGGTTCCTTTGGTGCTACCGTCAATGGCGGGGACGTCTCAGCTGCTTCTAATCTTTATCGAGAGGGTCTCGGCTGTGGTGCCTGTTACCAGGTGAGGTGTAAGAACAGTGGTTATTGTTCAGATCATGGCGTGACGATAGTGATAACGGACCAAGGTTCGGGTCATGACACTGATTTCATTCTTAGCAAACGAGCCTTCACTCGCATGGCTCAGACCACTGATGCTGCTGCCACTTTGTTGGCTTATGGCGTCGTTGATATTGAATACAGAAGCTACCCATCTAAAAATATCACTATTAAGATACATGAGAGTAGCAGCAACCCCCATTACTTGGCCTTCGTCATAGAGTACCAACAAGGCAAGAGAGATATCACTGCTGTACAGCTCTGCGAGACTCAGAACTTTGTGTGCAAGTTGCTAAGTAGGAGTTTTGGAGCAGTGTGGACTGCGAACAATCCTCCAAGTGGACCATTATCAGTGAGGATGTTGTTCAGTGATGATGATGGAGAAGACACGTGGCTCGTTCCTGTCAATAACATTCCTCAAGACTGGAAAGCTGGAGCAGCCTACGATTCTGGAGTTCAAGTTAACCCATAG 828 0.4638 MHPQLSLFHSCFLLLCSAKTMSLFALCSLLLTTTTLLSMQNQSVIDAASCSDCFVSSRASYYPNSDEHGTDVGACGFGSFGATVNGGDVSAASNLYREGLGCGACYQVRCKNSGYCSDHGVTIVITDQGSGHDTDFILSKRAFTRMAQTTDAAATLLAYGVVDIEYRSYPSKNITIKIHESSSNPHYLAFVIEYQQGKRDITAVQLCETQNFVCKLLSRSFGAVWTANNPPSGPLSVRMLFSDDDGEDTWLVPVNNIPQDWKAGAAYDSGVQVNP 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1208 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 172 IPR007112 -
Lele55g1208 275 PANTHER EXPANSIN-B3 31 272 - -
Lele55g1208 275 Pfam Expansin C-terminal domain 174 255 IPR007117 -
Lele55g1208 275 Gene3D - 38 169 IPR036908 -
Lele55g1208 275 Gene3D - 170 273 IPR036749 -
Lele55g1208 275 Pfam Lytic transglycolase 92 166 IPR009009 -
Lele55g1208 275 SUPERFAMILY Barwin-like endoglucanases 47 170 IPR036908 -
Lele55g1208 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 269 IPR007117 -
Lele55g1208 275 SUPERFAMILY PHL pollen allergen 172 269 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1208 Lele-ChrLele55 18710917 18713329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1208 36 271 Expansin Gene Family AT4G17030 43.983 3.86e-61 192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0282 53 2324035 2326314 Lele55g1208 55 18710917 18713329 hybridization
Lele54g0280 54 2365460 2367586 Lele55g1208 55 18710917 18713329 hybridization