LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele55g1195	ATGAACTGTTTCTTCTTCAAAAAGAAATCTAATAGCAGGGGAGAATCAAAATCGGCGCCGGAATTGCAAAATGAGAGGCAGCGGAATAACCCGGCGGAGAACCGGGTTTGCAAGTCGACGAGTTCGATACCGTCGCCGAGGAGCGTGACGGAGTTGTACAAAGAGAAAGCAAAAGAGAACAATTTCAGAGTTTTTAGTTTGCAAGAGCTTCTAGAAGCAACAAATGGGTTCAGTAGGATGCTCAAGATTGGTGAAGGTGGCTTTGGTAGCGTGTATAAAGGTACGATTAGGCCTCCCGGTGGACGAGGCGATCCAATCGTCGTAGCCATAAAAAAGCTCAACAAGCATGGATTTCAGGGTCACAAAGAATGGCTTGCTGAAGTTCAATTTCTTGGCGTTGTAAATCATCCAAATCTGGTAAAACTTCTGGGATACTGCTCCGTTGATGGAGAAAGAGGAATCCAACGGTTGTTAGTGTATGAGTATATGGCAAATAGAAGCCTAGAGCATCATCTTTTTAATCCTTCTATTCCTACCTTGCCTTGGAAAAGAAGATTGCAGATCATGATCGGTGCTGCCCAAGGATTAACTTATTTGCATGAAGGATTGGAATTTCAGGTGATATACCGAGATTTCAAAACTTCAAATGTTCTATTGGATGCGGATTTCCAACCAAGGCTCTCAGACTTTGGTCTTGCAAGGGAAGGCCCCCAAGGCGATAAAACTCATGTATCTACTGCGGTGGTTGGAACACAAGGATATGCTGCCCCGGAGTATGTAGAAACAGGGCATCTCAAAGTTGAATGTGACATTTATACTTTTGGAGTGGTACTGTATGAGATCATCACGGGGAGACGAGCGTTAGACAGAAACCGTCCGGCTGCAGAACAAAAACTTCTAAGTTGGGTTAAACAGTATCCTGCTGACACCGGCAGATTCAGCATGATCATAGACCCTCGTCTCAGAAACCATTTTTCTCCCGGCGCAGTTCGCAAAGTTGCCAAGTTGGCTGACGCCTGTACTAGTAAGAATCCTCGAGAAAGGCCAACTATGTCTCAGATAGTGGAAAGCTTGAAGGGAGCATTGCAGGTTTCAGAGACCTCTGATACTTCTCAGAATGAAACAGCCGAATCATCTCGATCTTCTCGGGCTCGAAGAGGTAAATAA	1167	0.4499	MNCFFFKKKSNSRGESKSAPELQNERQRNNPAENRVCKSTSSIPSPRSVTELYKEKAKENNFRVFSLQELLEATNGFSRMLKIGEGGFGSVYKGTIRPPGGRGDPIVVAIKKLNKHGFQGHKEWLAEVQFLGVVNHPNLVKLLGYCSVDGERGIQRLLVYEYMANRSLEHHLFNPSIPTLPWKRRLQIMIGAAQGLTYLHEGLEFQVIYRDFKTSNVLLDADFQPRLSDFGLAREGPQGDKTHVSTAVVGTQGYAAPEYVETGHLKVECDIYTFGVVLYEIITGRRALDRNRPAAEQKLLSWVKQYPADTGRFSMIIDPRLRNHFSPGAVRKVAKLADACTSKNPRERPTMSQIVESLKGALQVSETSDTSQNETAESSRSSRARRGK	388

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele55g1195	388	PANTHER	OS01G0588500 PROTEIN-RELATED	29	360	-	-
	Lele55g1195	388	MobiDBLite	consensus disorder prediction	1	48	-	-
	Lele55g1195	388	Gene3D	Transferase(Phosphotransferase) domain 1	163	386	-	-
	Lele55g1195	388	Gene3D	Phosphorylase Kinase; domain 1	48	162	-	-
	Lele55g1195	388	SUPERFAMILY	Protein kinase-like (PK-like)	55	358	IPR011009	-
	Lele55g1195	388	MobiDBLite	consensus disorder prediction	23	48	-	-
	Lele55g1195	388	CDD	STKc_IRAK	83	360	-	-
	Lele55g1195	388	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	163	373	-	-
	Lele55g1195	388	MobiDBLite	consensus disorder prediction	362	388	-	-
	Lele55g1195	388	ProSiteProfiles	Protein kinase domain profile.	77	362	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele55g1195	388	MobiDBLite	consensus disorder prediction	362	378	-	-
	Lele55g1195	388	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	207	219	IPR008271	GO:0004672\|GO:0006468
	Lele55g1195	388	ProSitePatterns	Protein kinases ATP-binding region signature.	83	112	IPR017441	GO:0005524
	Lele55g1195	388	Pfam	Protein kinase domain	79	356	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele55g1195	Lele-ChrLele55	18568092	18570197	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele55g1195	1	384	Glycoside Hydrolase	AT3G07070	41.103	2.42e-93	284

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Lele55g1195		Pkinase	1.2e-43	CL0016