Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1186 ATGGTTAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAACAAATGCAATTGGCAAAATTATGCCTAGCCTCCATTGGATACAAGATGGGACTCATTATCTGATAGGCAGAATTCCTGTTAAGATACTAGTTGTTTTCAATGATAGGACTATGTATCTTGAATTTGAATCAGTTCTTCATGTTCAGGGCCTGACAGGCACACCACTTTGGCGCAATGGGCCACCAGAGAAGCCAGTGCTATGCAATGCATGTGGATCTCGATGGAGAACAAAGGGAACCCTAGCAAATTATACCCCTTTACATGCTCGGACAGAAATGGATGATTATGAGGATCAAAGGCTTTCTAGGGCAAGGAACATATCATTTAATAAGAACAAAGAAGTGAAATTTCTCAAACGAAAGCAGAACCATGATGATTTAGTATCTGGTTGGGTTGCCCCTGATTGCAACCATGGATCTCAAAAGGTTATAGATGAAGATGCAAGCAATAGATCAAGTTCAGGATCAGCTGTCTCTAACTCTGAGAGCTGTGCTCAATTTGCTGGAACAGATGCTAGTGACTTGACAGGTCCTGCTCAGTCAATGGTGGGGGAAGGTATGGTGCCCTCAAAAAAGAGAACCTGTGTGAACCGTAAAAAGCCATCTCCTGTTGAGAAGCTCACAAAAGATTTATATACTATCCTTCATGAACAGCAGTTCTATTTCTCCGCATCTTCTGAAGAGGATCTTATTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTTATTAGGCATCCAAGCTCTATAGCCCGTGAAGAAGAATCTGAGGCCAGCTCCCTTTCAATTGATAACAAACAATGCCCAACGAGTGAGGCATATTCATACTCTGGTGCTGTTGATATGCATAATGATTTCACTGGCATGAAAATTCCATCTCAGGGAATTGGAAATATCAACTACTCTTCTAGCCAAGGAATTCAGCGGGAGAGACTTAAAAGGGAGCCTGAAACTTCACAAATCCTTGGATGTGATTCACCACTGTGCTTGATAGATTTAATTGATGTTGTAAACTATGAGGTGTTCTTGACAAACATGACAAATGATGAGCAGCAAAAGTTACTGAAGTGTCTCCCTGCCATTGATACCGCTAAACTTCCTGACAGCCTTAAAAGCATGTTCAACAGCTCTCGGTTGAGAAGGAACTTAACTTGCTTCCAACAGCTTCTTGGGGAAGGTGTCTTTGATACCTCTTCATGGGGGTCAAATGCTGGAGACCGCCAGGATTTGAAACGGCTTGCATTATCTGATTTTTCACAGTCAAAATGGGTGGAACAATATCATTCACTTGAGAGATGTAAATCCCAAGATGAAAAATCTGTTGCTCTTGGAGGTACTGGCACTGCATCCAGTAAAAACCAGAAGAGATTGTGTGACAGCTCAAAACAAAGTTTTCCTGAACTGAAGTCAACAGTTAGGAGCCCCAAAAGGGTTATCATGATGAAGGCTGGTAGTGAGGGCAAGGAAGTCCTTGAAGATGGTGGCTCTGGCTTCAGTCCAAAAGGTCTATTGGCTTTTCCCGCTGATAGCAGCCCACATATGCTGGATTCTTTCAACTTCATCGATGAGAGCTCTGATCAAGATCTGCTGCTCGAAGTCCGATCTAACAGTTCTTTCCCAGAAGCAGAACTGCTGCATCCAACCTTAAGATTCGGTTCTCAGCCTAGCACTAGCAGTAGCTCAGCTTACCAGTATGGTGCCCATTACTGA 1767 0.4295 MVKQGPCYHCGVTTNAIGKIMPSLHWIQDGTHYLIGRIPVKILVVFNDRTMYLEFESVLHVQGLTGTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTEMDDYEDQRLSRARNISFNKNKEVKFLKRKQNHDDLVSGWVAPDCNHGSQKVIDEDASNRSSSGSAVSNSESCAQFAGTDASDLTGPAQSMVGEGMVPSKKRTCVNRKKPSPVEKLTKDLYTILHEQQFYFSASSEEDLIFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSIDNKQCPTSEAYSYSGAVDMHNDFTGMKIPSQGIGNINYSSSQGIQRERLKREPETSQILGCDSPLCLIDLIDVVNYEVFLTNMTNDEQQKLLKCLPAIDTAKLPDSLKSMFNSSRLRRNLTCFQQLLGEGVFDTSSWGSNAGDRQDLKRLALSDFSQSKWVEQYHSLERCKSQDEKSVALGGTGTASSKNQKRLCDSSKQSFPELKSTVRSPKRVIMMKAGSEGKEVLEDGGSGFSPKGLLAFPADSSPHMLDSFNFIDESSDQDLLLEVRSNSSFPEAELLHPTLRFGSQPSTSSSSAYQYGAHY 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1186 588 Pfam GATA zinc finger 65 93 IPR000679 GO:0006355|GO:0043565
Lele55g1186 588 MobiDBLite consensus disorder prediction 152 175 - -
Lele55g1186 588 MobiDBLite consensus disorder prediction 568 588 - -
Lele55g1186 588 Pfam Asx homology domain 344 440 IPR028020 -
Lele55g1186 588 Gene3D - 63 138 IPR013088 GO:0006355|GO:0008270
Lele55g1186 588 SMART GATA_3 60 105 IPR000679 GO:0006355|GO:0043565
Lele55g1186 588 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 343 456 IPR044867 -
Lele55g1186 588 MobiDBLite consensus disorder prediction 159 175 - -
Lele55g1186 588 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 64 97 - -
Lele55g1186 588 MobiDBLite consensus disorder prediction 569 588 - -
Lele55g1186 588 PANTHER OSJNBB0038F03.10 PROTEIN 7 582 IPR044589 -
Lele55g1186 588 MobiDBLite consensus disorder prediction 460 479 - -
Lele55g1186 588 MobiDBLite consensus disorder prediction 457 479 - -
Lele55g1186 588 CDD ZnF_GATA 63 105 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1186 Lele-ChrLele55 18484412 18492267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1186 63 565 C2C2-Gata Transcription Factor Family AT4G17570 48.375 6.59e-126 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele55g1186 ASXH 8.3e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0476 49 2841410 2843437 Lele55g1186 55 18484412 18492267 CCT
Lele53g0305 53 2553507 2558997 Lele55g1186 55 18484412 18492267 hybridization
Lele54g0301 54 2548253 2553439 Lele55g1186 55 18484412 18492267 hybridization