Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1171 ATGTTCGGACAGGCTACTTACGATTCGGATTTAACCTTGTTGGAGTCGATTCGACTCCACTTGCTCGGGGACTTGAAGACTGCTTTTGCTGATTCGGATACTTCTTCGGGTTCTGCTCCGCTTTACGCTCGGAGCTCCAGTTTCAGCAGCTTGTACCCGTGTTTAACGGACAATTGGGGCGAATTGCCGCTCAAGGAGGACGATTCCGAAGACATGGTGCTCTACGGTGTCCTCCGTGATGCCGTCACCGTCGGGTGGGTTCCCTCTCTCGATGTCGGGTCGCCCGAGAGCATTTCTTCTGGTTTCATCCCAACCGTTACCGTGAAATCGGAGCCCGATGTTTTGCCGGTTTTGGATTCCCCCGCTGGCCCTCCTCCCGTGGTAAAGCAAGAGAAGGTGGCTGAGGCAGTGGTACCAGCCGCAGTTCCGTCGAAGGGGAAGCATTACCGAGGAGTAAGACAACGGCCGTGGGGGAAATTCGCGGCGGAGATCCGTGACCCGGCGAAGAACGGAGCTCGGGTTTGGCTCGGAACATTCGAGACAGCCGAAGACGCGGCTCTGGCTTACGATCGAGCCGCGTACAGGATGCGAGGATCACGTGCTCTGCTGAATTTCCCACTGAGAGTGAATTCGGGCGAACCCGACCCGGTAAGAGTGACATCGAAGAGGTCATCGCCGGAGAGATCTTGGTCGAGCTTGTCGTCGTCGTCGTCGACGGAGAGCGGGGCGTCGGCGAAGAGAAGAAAGAAGGAGGTGGTGGGGACAACAGGGGGAAAGGCGACAGGGCAAGTGGGGAGCCAAGCGGGAACGACGTCGTTATTGGTGAGCTAA 831 0.5752 MFGQATYDSDLTLLESIRLHLLGDLKTAFADSDTSSGSAPLYARSSSFSSLYPCLTDNWGELPLKEDDSEDMVLYGVLRDAVTVGWVPSLDVGSPESISSGFIPTVTVKSEPDVLPVLDSPAGPPPVVKQEKVAEAVVPAAVPSKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSPERSWSSLSSSSSTESGASAKRRKKEVVGTTGGKATGQVGSQAGTTSLLVS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1171 276 MobiDBLite consensus disorder prediction 210 276 - -
Lele55g1171 276 MobiDBLite consensus disorder prediction 223 242 - -
Lele55g1171 276 SMART rav1_2 148 212 IPR001471 GO:0003700|GO:0006355
Lele55g1171 276 CDD AP2 147 206 IPR001471 GO:0003700|GO:0006355
Lele55g1171 276 Gene3D AP2/ERF domain 147 209 IPR036955 GO:0003700|GO:0006355
Lele55g1171 276 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Lele55g1171 276 PRINTS Ethylene responsive element binding protein signature 172 188 IPR001471 GO:0003700|GO:0006355
Lele55g1171 276 PANTHER DNA-BINDING DOMAIN 135 243 IPR044808 GO:0003700|GO:0009873
Lele55g1171 276 SUPERFAMILY DNA-binding domain 148 208 IPR016177 GO:0003677
Lele55g1171 276 Pfam AP2 domain 148 198 IPR001471 GO:0003700|GO:0006355
Lele55g1171 276 MobiDBLite consensus disorder prediction 259 276 - -
Lele55g1171 276 FunFam Ethylene-responsive transcription factor 2 147 207 - -
Lele55g1171 276 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1171 Lele-ChrLele55 18335371 18336201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1171 5 262 AP2-EREBP Transcription Factor Family AT4G17500 55.056 5.51e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele55g1171 AP2 1.1e-14 CL0081