Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1170 ATGGCAAACTCTGTTGAGCTTTCAGCCCTCGACCGCATAAAATTGCATCTTCTGGGTGAATTGTCTCCAGTTGGCACTTTCTCCCGTGGCCTTAGCAGTTCAGCGAGCGATGCTACCCAACAATTCTGGTTTGGTGAATCAAACGGAGCAATTTCCAGCTCTGAATCTGACTCTCTCTGTGCCCAATCATCGAGTTCTGAATCTTCAATCGCTGTGTCCGATTACCTCCCAGAACTGTTCGAATTCCCATCCAATTCCGCAGATCTATTTGACTTCGAGTTCAAAAATGAAGTCATTGACCTCTCAACGCCCAAATTGGAAAGCGAAACTTCACAATTTGATGCCAATTTCTCCCAATTCGAAGCAAACTCACGGGCAACATCAACCTCTGGCTCACAGTCCAGCAGTTCCATGTTCGAGTTTCAAACTAGACCCCAAAGCGTCGAGAAGAAATCTCAATTGAATCGGAAACCATCGTTGCAAATCACGCTACCCAAAAAAACCGAGTGGATCCAATTTGGAAACCCGGATCAACAACAGGAGGTTTCAGAAATGTTCGTGCAGAATAATTCAAACCATGAAGAGAAAAGACACTACAGAGGCGTCCGACAGAGGCCATGGGGCAAGTTCGCAGCCGAGATTCGGGACCCGAACAAACGTGGATCTAGGGTGTGGCTCGGAACATTCGACACGGCGATCGAAGCCGCAAAAGCCTATGATCGAGCCGCGTTTAGGCTTCGCGGCTCCAAAGCCATACTCAATTTCCCTCTGGAAGTAGGAACCTCCGGTTCGACGGGCGGCACGGAGGAGAAAAAACGCCGGCGTGAAGATGATAAGGTGGAGGCTGAAATGGAAGGGAAACCAGTGGTGAAGAAAGAGAAAACGGCGGTATCTGACGTGGGAGGGATAAGGGAGATGCCGTTAACGCCGTCAATGTGGACCGGGTTCTGGGAGAATGATTTGAAGGACATTTTCCCAGTCCCGCCGTTATCACCGTTATCTCCCCACCCGCCTTTGGGATTTCCACAGCTTATGGTTGTATGA 1044 0.4933 MANSVELSALDRIKLHLLGELSPVGTFSRGLSSSASDATQQFWFGESNGAISSSESDSLCAQSSSSESSIAVSDYLPELFEFPSNSADLFDFEFKNEVIDLSTPKLESETSQFDANFSQFEANSRATSTSGSQSSSSMFEFQTRPQSVEKKSQLNRKPSLQITLPKKTEWIQFGNPDQQQEVSEMFVQNNSNHEEKRHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFRLRGSKAILNFPLEVGTSGSTGGTEEKKRRREDDKVEAEMEGKPVVKKEKTAVSDVGGIREMPLTPSMWTGFWENDLKDIFPVPPLSPLSPHPPLGFPQLMVV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1170 347 CDD AP2 198 256 IPR001471 GO:0003700|GO:0006355
Lele55g1170 347 ProSiteProfiles AP2/ERF domain profile. 198 256 IPR001471 GO:0003700|GO:0006355
Lele55g1170 347 SMART rav1_2 198 262 IPR001471 GO:0003700|GO:0006355
Lele55g1170 347 MobiDBLite consensus disorder prediction 267 287 - -
Lele55g1170 347 FunFam Ethylene-responsive transcription factor 2 197 258 - -
Lele55g1170 347 PANTHER DNA-BINDING DOMAIN 135 273 IPR044808 GO:0003700|GO:0009873
Lele55g1170 347 PRINTS Ethylene responsive element binding protein signature 199 210 IPR001471 GO:0003700|GO:0006355
Lele55g1170 347 PRINTS Ethylene responsive element binding protein signature 238 258 IPR001471 GO:0003700|GO:0006355
Lele55g1170 347 MobiDBLite consensus disorder prediction 259 287 - -
Lele55g1170 347 MobiDBLite consensus disorder prediction 124 155 - -
Lele55g1170 347 Pfam AP2 domain 198 248 IPR001471 GO:0003700|GO:0006355
Lele55g1170 347 Gene3D AP2/ERF domain 197 258 IPR036955 GO:0003700|GO:0006355
Lele55g1170 347 SUPERFAMILY DNA-binding domain 198 258 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1170 Lele-ChrLele55 18322888 18323931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1170 1 347 AP2-EREBP Transcription Factor Family AT5G47230 45.245 1.39e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele55g1170 AP2 1.1e-15 CL0081