Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1165 ATGTGCATTAGCCAAATGCTCAAAAGCAAAAAGTTCTTCAAAAAATCCTCAGAAATCATGCTCTCAAATCACGATTTTGCCTTGAATCTCAGCTTGAGCTTCCCTCACTCTGCTCTTAATAATCCCATCAAATCTTCAGATCGGTGTTCTGAAGGATGCAGAGGTGAAGCTCGGTCGTCTCTCGGAGGAATCGATGTGAATCGATTGCCGTCGGAGGTTGATTGCGAAGAGGAGGCGGGGATTTCGTCTCCTAACAGCACGATTTCGAGCGCGAGCGGTAAGCGAAGCGAGAGAGATCAGGCCAATAGTAGTGAAGAGAACGAAACCGACAGAGCTTATTCTCGAGGAATCAGCGATGAAGAAGACAACGAAACTTCCAGAAAGAAGCTCAGGCTCTCCAAAGATCAGTCCGCTATTCTCGAAGAAAGCTTCAAAGAGCACAATACTCTCAATCCCAAGCAAAAGTTGGCACTGGCGAAGCAGTTAGGTCTGAGACCTCGACAAGTGGAGGTGTGGTTCCAGAACAGAAGAGCGAGGACGAAGCTGAAGCAAACGGAGGTGGATTGTGAGTTCTTGAAGAGGTGTTGTGAGAATCTGACGGAGGAGAACAGGCGGTTGCAGAAAGAGGTGCAGGAGCTGAGAGCCCTGAAACTTTCCCCGCAAATGTACATGCAAATGACACCACCCACTACTCTAACCATGTGCCCATCTTGTGAGAGGTTTGGTGGTCGGCCCATTTCTCTCGGCCCATGGGCCATTCCTCAGCCCAACTCGCGTCTTGTTCATCCCAGGTCATGA 798 0.4925 MCISQMLKSKKFFKKSSEIMLSNHDFALNLSLSFPHSALNNPIKSSDRCSEGCRGEARSSLGGIDVNRLPSEVDCEEEAGISSPNSTISSASGKRSERDQANSSEENETDRAYSRGISDEEDNETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQMYMQMTPPTTLTMCPSCERFGGRPISLGPWAIPQPNSRLVHPRS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1165 265 MobiDBLite consensus disorder prediction 98 130 - -
Lele55g1165 265 MobiDBLite consensus disorder prediction 75 130 - -
Lele55g1165 265 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Lele55g1165 265 FunFam Homeobox-leucine zipper protein 18 113 188 - -
Lele55g1165 265 SMART halz 183 226 IPR003106 GO:0006355|GO:0043565
Lele55g1165 265 Gene3D - 131 181 - -
Lele55g1165 265 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Lele55g1165 265 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 46 241 - -
Lele55g1165 265 Coils Coil 182 219 - -
Lele55g1165 265 Pfam Homeobox associated leucine zipper 183 217 IPR003106 GO:0006355|GO:0043565
Lele55g1165 265 SUPERFAMILY Homeodomain-like 118 184 IPR009057 -
Lele55g1165 265 CDD homeodomain 127 184 IPR001356 GO:0003677
Lele55g1165 265 SMART HOX_1 125 187 IPR001356 GO:0003677
Lele55g1165 265 Pfam HD-ZIP protein N terminus 32 99 IPR006712 GO:0005634
Lele55g1165 265 MobiDBLite consensus disorder prediction 80 97 - -
Lele55g1165 265 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Lele55g1165 265 PRINTS Lambda-repressor HTH signature 154 163 IPR000047 GO:0003677
Lele55g1165 265 PRINTS Lambda-repressor HTH signature 163 179 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1165 Lele-ChrLele55 18255493 18256907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1165 19 252 Homeobox Transcription Factor Family AT5G47370 60.300 3.17e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele55g1165 HD-ZIP_N 4.5e-17 No_clan