Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1158 ATGGAACCAGAACAACAAGAACCAGAAGCTCTCCTTCACAGTACTAAACTTCAACCAACCACTCATTCTTCTTCTTCTTCTACCTCCTCCTGCTCCTCCTCCAGCACCACAGAAGCCATTAATGTACACCACGAAGCTCACAAAGAAGAGAAGGTGAAGAAGACGACGACGAAGAAGACGACGAGTAACAAGAACACAGACATGGCCGACGGCGGTAAGCACCCAACGTACAGAGGCGTACGTATGCGTCAATGGGGGAAATGGGTTTCAGAAATCAGAGAACCCAGAAAGAAATCAAGAATATGGCTCGGCACTTTCCCTACTGCAGAAATGGCGGCTCGAGCTCACGACGTCGCCGCTCTCACCATCAAAGGAAGCTCTGCTTTCCTCAACTTCCCGGAGCTAGCGACGGTTCTTCCTCGTCCGGCCAGTAACTCCCCAAAGGACGTCCAAGCCGCCGCCGCCAAGGCAGCCGCCTTCAATTACCCCATAAACCTTCAAGAAGCCGAAGCCGAGTCATCCGAGGTGATTCAAGCCGACGACGCTCCGGCACTGTCAAGTTCGCCGTTAACGGAAGAGGACGACACGTTCTTCAACCTCCCAGATATCTTAAATCACGGCGGCCCCGACGAGTTTCATTACTCCTCACTCTGGCTCCTAGACGGTGCTGATTACAGAGACTCAGGCTTCCGGCTCGAAGAGCCATTTCTATGGGACTGTTATTAG 726 0.5248 MEPEQQEPEALLHSTKLQPTTHSSSSSTSSCSSSSTTEAINVHHEAHKEEKVKKTTTKKTTSNKNTDMADGGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALTIKGSSAFLNFPELATVLPRPASNSPKDVQAAAAKAAAFNYPINLQEAEAESSEVIQADDAPALSSSPLTEEDDTFFNLPDILNHGGPDEFHYSSLWLLDGADYRDSGFRLEEPFLWDCY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1158 241 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Lele55g1158 241 MobiDBLite consensus disorder prediction 1 78 - -
Lele55g1158 241 MobiDBLite consensus disorder prediction 11 40 - -
Lele55g1158 241 FunFam Ethylene-responsive transcription factor 2 75 134 - -
Lele55g1158 241 MobiDBLite consensus disorder prediction 41 57 - -
Lele55g1158 241 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Lele55g1158 241 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Lele55g1158 241 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Lele55g1158 241 Gene3D AP2/ERF domain 76 134 IPR036955 GO:0003700|GO:0006355
Lele55g1158 241 CDD AP2 77 135 IPR001471 GO:0003700|GO:0006355
Lele55g1158 241 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Lele55g1158 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 50 205 - -
Lele55g1158 241 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1158 Lele-ChrLele55 18142148 18142873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1158 71 237 AP2-EREBP Transcription Factor Family AT2G44940 51.232 3.51e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele55g1158 AP2 1.3e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0533 50 3199740 3206259 Lele55g1158 55 18142148 18142873 CCT
Lele51g0518 51 3054932 3060212 Lele55g1158 55 18142148 18142873 CCT
Lele52g0533 52 3263481 3270443 Lele55g1158 55 18142148 18142873 CCT
Lele53g0327 53 2838818 2839543 Lele55g1158 55 18142148 18142873 hybridization
Lele54g0328 54 2848210 2849668 Lele55g1158 55 18142148 18142873 hybridization