Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1157 ATGGCCCCAAAAAGCCAGACTGAGGCACCCATGAGGAAATTCATTAACCGAGGAGGTTGGACTCCCGAGGAAGATCGAAAACTTGCTCAATGCATTGAACTTCATGGTGCTAAGAGGTGGAAGTCCATTGCTCTCAAATCAGGTTTAAACAGATGTGGCAAGAGTTGCAGGCTGAGATGGCTCAACTATCTGAGGCCAAACATCAAGAGAGGCAACATTTCACTTGAAGAAGAAGATTTAATCCTCAGGCTTCACAAACTCCTCGGAAACAGGTGGTCGTTGATAGCTGGGAGGCTTCCAGGACGAACAGACAATGAAATTAAAAATTACTGGAATTCTCATTTGTGCAAAAAAGTAAATGGTGAAGAGAAGAAGAAGAAGCCAAACGCTTCATCAACCCCACAAGAAGAAGAAAGCGCACCCCAAAATACTTGGGATAGTGCTCTTAATGTGGAGAATAATAATGAGGAAGCCATTAATGGAAATAGCGGAATTGTGAACTCAGAAGTTAGCTTTGATGTGAATGAGTTCCTTGACTTCTCTCCCAAAGAAGGATCCTTTCATGAGTTGGATTGGGTGAACAAGTATCTAGAACTAGATGAGTTTCCAGGGACAAATGGGGAATTTTGA 630 0.427 MAPKSQTEAPMRKFINRGGWTPEEDRKLAQCIELHGAKRWKSIALKSGLNRCGKSCRLRWLNYLRPNIKRGNISLEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNGEEKKKKPNASSTPQEEESAPQNTWDSALNVENNNEEAINGNSGIVNSEVSFDVNEFLDFSPKEGSFHELDWVNKYLELDEFPGTNGEF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1157 209 Gene3D - 74 146 - -
Lele55g1157 209 FunFam Transcription factor TT2 73 145 - -
Lele55g1157 209 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lele55g1157 209 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Lele55g1157 209 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Lele55g1157 209 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Lele55g1157 209 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Lele55g1157 209 FunFam MYB-related transcription factor 16 69 - -
Lele55g1157 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Lele55g1157 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Lele55g1157 209 SMART sant 16 66 IPR001005 -
Lele55g1157 209 SMART sant 69 117 IPR001005 -
Lele55g1157 209 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 13 152 - -
Lele55g1157 209 CDD SANT 20 64 IPR001005 -
Lele55g1157 209 Gene3D - 17 69 - -
Lele55g1157 209 CDD SANT 74 115 IPR001005 -
Lele55g1157 209 MobiDBLite consensus disorder prediction 121 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1157 Lele-ChrLele55 18103473 18104989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1157 4 164 MYB Transcription Factor Family AT3G13540 50.898 3.10e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele55g1157 Myb_DNA-binding 1.4e-17 CL0123