Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1149 ATGGACGAAGGACCACCAAACAGGGAACTTTATGCACTTTTAAACTTGTCGCCGGATGCCTCCGATGAAGAAATTCGAAGAGCTTATCGTCAATGGGCACAAGCCTATCACCCTGATAAATACCAAGCTCCCCACATGAAAGACATTGCTACTGCAAACTTTCAACGTATTTGTGAAGCGTATGAAGTTTTGTCGGATCCAAATAAAAGGCAAATATATGACATATATGGCATGGAAGGTTTGACCTCTGGTCTGGAACTTGGTTCGAAGCTGGATAAAGCAGAAGAGATAAAGGCTGAATTGGAGAGGCTACGTCGAATGAAGGAGATGCAAAAGATGTCAGCACATTTTAGAACTTCTGGTACTATTCTGGCCAATATGTCTTTGCCACACTGGCGAAATGGTGATGGCCTCATGAGAGGAATGTCTATGACCAGCGAAGTTCAGTCTCAGTTATCAAAACGTAATAGTGTTGCAATTGGTGGCAATTTAGCAGTTAATGGCAATGCAGGTGGTGGCGTTGCTACTGCCTTGTTTAGGCATGAAATTTCAGAAGTTTCTTCCGTAGAGTTTATGGCTTCTGCTGGATTGCGAGCACTGATAGGGGTGCAAACAACACGTCAATTATCAGCACATTCAGCTGCTACGTTGGGCCTTGCTATGTCCATGCAAGATGGTTCATTGAATCTTTCTAATTCATGGAACCGCCAACTGTCAGAAACAGCAAGTGGACATATACAACTCGCTTTGGGGCCACAGTCATCTATAGCTGTAGGGTGGCAAAAGAAAGATGAGAGAAGATCTGCCTCAGGAGAAGTGAAGTTTGGCACAAGTTCTTTTGATGTAGCAGCTCATTATACTCATCACTTGTCTTCTAAATCTCATGGCCGCATCGCGGGCAGAATTGGGAGTTCAACCCTTGAGATTGAAATCGGGGGTGGGAGGAAGTTATCCAAATTCAGCACTGTGCGCTGGTTGTATACAATAGGAATTCAGGGTATTATTTGGAGATTTGAACTGCACCGTGGTGGCCAAAAGTTAATTATCCCTATTTTGCTGACCAGACATTTGGACCCTGTCTTTGCTAGTGGGGCACTGATTATTCCAGCATCTCTATACTACCTTTTGAAGAAATTTTTAATCAAACCCTATTACCTTAAAAGGAATAAGCAGAAGGCTCTAGAGAATGCAGAGAAAACTTCTGCTCAGGTTCAAGAAGCAAGGGCCGCCGCAGGGAAGGCTCAGCAATTACAACAAACTGTTACTAATAGGAAAAGAAATAAGCAATTAGAAACACGCGGACTAGTTATTACCAGAGCATTATATGGAAATCACGTTATTTTGAACAAGATAAATGCTTCAAGTCATGAATCAGCTTCAGATATCATAGATGTGACAATACCTCTAAATTTCCTTGTTAGTGATTCTGGCCAACTCAAGCTTCATGAAGGTGTAAAAAAATCAGGCATCATGGGCTTTTGCGATCCATGTCCAGGAGAACCTAAAAAGTTGTATGTAGAGTACTCTTACGGTGGCAACCAATACAAGGTCTTGGTTGATGATTGTGAAGAGCTATTGATACCCCGGGGAGTTCACAGGATTTGA 1605 0.4255 MDEGPPNRELYALLNLSPDASDEEIRRAYRQWAQAYHPDKYQAPHMKDIATANFQRICEAYEVLSDPNKRQIYDIYGMEGLTSGLELGSKLDKAEEIKAELERLRRMKEMQKMSAHFRTSGTILANMSLPHWRNGDGLMRGMSMTSEVQSQLSKRNSVAIGGNLAVNGNAGGGVATALFRHEISEVSSVEFMASAGLRALIGVQTTRQLSAHSAATLGLAMSMQDGSLNLSNSWNRQLSETASGHIQLALGPQSSIAVGWQKKDERRSASGEVKFGTSSFDVAAHYTHHLSSKSHGRIAGRIGSSTLEIEIGGGRKLSKFSTVRWLYTIGIQGIIWRFELHRGGQKLIIPILLTRHLDPVFASGALIIPASLYYLLKKFLIKPYYLKRNKQKALENAEKTSAQVQEARAAAGKAQQLQQTVTNRKRNKQLETRGLVITRALYGNHVILNKINASSHESASDIIDVTIPLNFLVSDSGQLKLHEGVKKSGIMGFCDPCPGEPKKLYVEYSYGGNQYKVLVDDCEELLIPRGVHRI 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1149 534 Coils Coil 387 410 - -
Lele55g1149 534 Pfam DnaJ-like protein C11, C-terminal 383 528 IPR024586 -
Lele55g1149 534 PRINTS DnaJ domain signature 49 69 IPR001623 -
Lele55g1149 534 PRINTS DnaJ domain signature 11 29 IPR001623 -
Lele55g1149 534 PRINTS DnaJ domain signature 29 44 IPR001623 -
Lele55g1149 534 PRINTS DnaJ domain signature 69 88 IPR001623 -
Lele55g1149 534 PANTHER CHAPERONE PROTEIN DNAJ 13 3 534 IPR042162 -
Lele55g1149 534 SUPERFAMILY Chaperone J-domain 7 80 IPR036869 -
Lele55g1149 534 SMART dnaj_3 8 69 IPR001623 -
Lele55g1149 534 Gene3D DnaJ domain 5 99 IPR036869 -
Lele55g1149 534 Coils Coil 87 114 - -
Lele55g1149 534 CDD DnaJ 9 66 IPR001623 -
Lele55g1149 534 Pfam DnaJ domain 10 74 IPR001623 -
Lele55g1149 534 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Lele55g1149 534 ProSiteProfiles dnaJ domain profile. 9 77 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1149 Lele-ChrLele55 18022849 18032434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1149 11 74 C2H2 Transcription Factor Family AT1G74250 46.970 1.59e-08 55.5