Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1144 ATGAAGGCCCATTTCGCCACTCTCCCTCTTCCGCCCAAGCCTCCACCACCACCACCGTCACCTCCTTCGCCTTTATTCTCATGTTCTTCCTCACAAGATTCAGACGACAACGCCCTGATTTATGGCCTCAGAGAAAATCCCAAGAAAAGCTTCAGGCTCGCAGATCCTGAGTTCTCTTTCGTTGATACTACTGCTGGCTCTGTTATTATTCAGGACCGAGAGAGCGAGAGCGAGTTAAAGAACCCAACTCGTCTTCTATCCATGCGAACCAGAACCCAGAGGCTAACATCACCCAAGAGGCTTAAACCCAGTCTCTCCGAGTCGCCGCCGCCCACTAAACCCGAACCGGCGAGCTCTGTTTCTGAAACTAGCGCTGAAGAAGATGTAGCTATGTGTCTCATTATGCTCTCTAGAGACGAATGGAAGAGAAACTCCGTGAAGGAAGAAGAAGATCGAGACGAGAAATCGAAGCGATTCAAGGAGATCGAGGTGAAGAAAGGAGTTCGCGGGAAGCATCAGTGTGAGAAATGCAGAAAAACGTTTCGATCGTTTCGAGCATTGGGGAGTCACAGAAACGTCTGTTTTCGCGAAGAAGAAGAAGAAGCGAGAAACGCAGGTAACAAGAAGAACAACAACAATGATTCGATTTTCGAATGCCCATTTTGTTATAAGGTGTTCGGGTCCGGTCAAGCACTCGGAGGCCACAAGAGATCTCATCTTGTACAATTTTCATCTTCAACCTTGAACGATTCGGCAACATTAGTCAAGCAAAGCTTCATAGATCTCAACTTGCCAGTTCCAGTTGCCGCAGCAGCAACAGCAGAAGATGAACTCAGTAGTGTGGTTTCTGATTCATAA 858 0.4767 MKAHFATLPLPPKPPPPPPSPPSPLFSCSSSQDSDDNALIYGLRENPKKSFRLADPEFSFVDTTAGSVIIQDRESESELKNPTRLLSMRTRTQRLTSPKRLKPSLSESPPPTKPEPASSVSETSAEEDVAMCLIMLSRDEWKRNSVKEEEDRDEKSKRFKEIEVKKGVRGKHQCEKCRKTFRSFRALGSHRNVCFREEEEEARNAGNKKNNNNDSIFECPFCYKVFGSGQALGGHKRSHLVQFSSSTLNDSATLVKQSFIDLNLPVPVAAAATAEDELSSVVSDS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1144 285 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 281 IPR044303 GO:0006355
Lele55g1144 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 239 IPR013087 -
Lele55g1144 285 SMART c2h2final6 172 192 IPR013087 -
Lele55g1144 285 SMART c2h2final6 217 239 IPR013087 -
Lele55g1144 285 MobiDBLite consensus disorder prediction 81 103 - -
Lele55g1144 285 Gene3D Classic Zinc Finger 169 239 - -
Lele55g1144 285 SUPERFAMILY beta-beta-alpha zinc fingers 172 239 IPR036236 -
Lele55g1144 285 Pfam C2H2-type zinc finger 217 239 - -
Lele55g1144 285 Pfam C2H2-type zinc finger 172 191 - -
Lele55g1144 285 ProSitePatterns Zinc finger C2H2 type domain signature. 219 239 IPR013087 -
Lele55g1144 285 MobiDBLite consensus disorder prediction 1 37 - -
Lele55g1144 285 MobiDBLite consensus disorder prediction 66 125 - -
Lele55g1144 285 MobiDBLite consensus disorder prediction 8 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1144 Lele-ChrLele55 17970648 17971505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1144 54 281 C2H2 Transcription Factor Family AT3G60580 37.154 2.67e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele55g1144 zf-C2H2_6 1.2e-10 CL0361