Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1138 ATGGTGAAGATAGCTCTTGGTAGCTTTGGTGACTCTCTCAGTGTTGCTTCCATTAAGGCTTATATAGCAGAGTTCATCGCCACTTTGCTTTTCGTCTTTGCCGGCGTCGGATCGGCCATAGCTTACGGTGCCCTTACTAAGGATGCGGCGTTGGATCCGGCGGGGCTAGTGGCGGTGGCGGTGGCGCATGCATTTGCACTATTCGTCGGAGTGTCAGTGGCAGCCAACATCTCCGGTGGCCATTTGAATCCAGCTGTCACTTTTGGATTGGTTATTGGAGGCAACATCACCGTTTTGACTGCCATCTTGTATTGGGCTCACCAATTGTTGGGATCCTTGGTTGCTTGCCTCCTCCTCAAATTTGTCACCAGTGCTCCGACCATTCCAGTGCATGGACTTGCTTCAGGAGTGGGTGTTGCTGAAGGCATAGTGTTCGAAATTGTGGCCACTTTTGGACTCGTTTACACTGTGTATGCGACTGCAGCTGACCCCAAAAAGGGCTCATTGGGAATTATTGCACCCATCGCTATCGGCTTCATTGTTGGTGCCAACATCTTGGCCGCCGGCCCATTCAGCGGCGGTTCAATGAACCCTGCCCGTTCATTCGGCCCGGCCGCCGTATCTGGTGACTTCACCAACTACTGGATCTACTGGGTCGGCCCGTTGATTGGTGGTGGTTTGGCCGGGTTGATCTACGGGGACGTCTTCATTGGCTCATATGCTCCTGTTCCTACTGAAAACTACCCTTGA 750 0.528 MVKIALGSFGDSLSVASIKAYIAEFIATLLFVFAGVGSAIAYGALTKDAALDPAGLVAVAVAHAFALFVGVSVAANISGGHLNPAVTFGLVIGGNITVLTAILYWAHQLLGSLVACLLLKFVTSAPTIPVHGLASGVGVAEGIVFEIVATFGLVYTVYATAADPKKGSLGIIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAAVSGDFTNYWIYWVGPLIGGGLAGLIYGDVFIGSYAPVPTENYP 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1138 249 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele55g1138 249 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele55g1138 249 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele55g1138 249 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele55g1138 249 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele55g1138 249 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele55g1138 249 PANTHER AQUAPORIN-8 4 238 IPR034294 -
Lele55g1138 249 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele55g1138 249 FunFam Probable aquaporin TIP1-1 2 247 - -
Lele55g1138 249 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele55g1138 249 SUPERFAMILY Aquaporin-like 16 239 IPR023271 -
Lele55g1138 249 Gene3D Glycerol uptake facilitator protein. 2 241 IPR023271 -
Lele55g1138 249 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Lele55g1138 249 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1138 Lele-ChrLele55 17883991 17886119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1138 1 247 Major Intrinsic Protein MIP AT5G47450 76.518 3.71e-134 376