Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1122 ATGGATTTGAAGGCGTCTCATGCTTCTCCTGTTCTTACTGATCCTGTTCCAGTAAACAAGTCAATACTAGGAAGGCATTCTGGTCTCATAAGTTACTCGCAGCAAGATTCATCACTCTCTCCTGTTAAGTATTCAAGAAATTCTAGTTCAAGAAAGAGTTCTTCAGGAAATCTTGATGATGTTCTCATCAACAGTTTGCTCGACGCCATGCAAGCTTCTTCGCCTCCCAGGAAGAAGCCGCCCACCGAGGGCGGTTTCAACTCTCACATCGATTCCGAACAAGACTATCGCTCCTGGTTGCTTGAATATCCATCGGCGCTAGAGTGTTTCGAGGAAATGATTGAGCATGCCAAGAACAAGAAGATTGCAATGTTCCTAGACTACGACGGCACTCTTTCACCCATAGTGGATGATCCAGATTGCGCTTTCATGTCTGAAGCTATGCGTAGTGTAGTACGGGATGTGGCGAAGTGTTTTCCAACGGCAATCATCAGTGGAAGAAGCCGAGACAAGGTTTATGATTTAGTTAAACTAACGGAACTGTACTATGCTGGGAGTCATGGGATGGACATTATTGGACCAGCTTGTCCCTCTCTCTCTAATACCCATCCCCAGTGCTGTGTTAAGTCCACTGACCAACAGGGAAAGGAGATAACTCTGTTCCAACCTGCTAGAGAATTCCTGCCTACAATTGATGAGGTTTTTAAGAGGCTGGTGGAAATCACAAAAGATATAAAAGGTGCAAAGGTTGAGAACCACAAGTTTTGTGTTTCTGTCCATTATCGTAATGTAGAAGAAAACAATTGGACAGTTATTGGACAACTTGTGCATGACATGTTAAAACAGTACCCTATTCTACGTTCGACATACGGACGCAAGGTTTTAGAGGTTCGTCCTGTGATAGATTGGAACAAGGGAAAAGCAGTTGAATTTTTACTTGAGTCTCTGGGGTTAAGTGAACGAGATGACGTGCTTGCCATCTACATAGGAGATGATAAGACCGATGAAGATGCTTTCCAGGTGCTGAGAGAGAACAAAGGAGGTTATGGGATTTTAGTTTCGTCCACAAGGAAACAAAGCAATGCCTTCTATTCTCTCCGGGACCCATCTCAGGTCATGAAATTTCTGGAAATGTTGGTGAATTGGAAGAAGAAGGAAGAAGAAAACAATCACCAACGGAAGAGGCATTCGTTCTAA 1197 0.4361 MDLKASHASPVLTDPVPVNKSILGRHSGLISYSQQDSSLSPVKYSRNSSSRKSSSGNLDDVLINSLLDAMQASSPPRKKPPTEGGFNSHIDSEQDYRSWLLEYPSALECFEEMIEHAKNKKIAMFLDYDGTLSPIVDDPDCAFMSEAMRSVVRDVAKCFPTAIISGRSRDKVYDLVKLTELYYAGSHGMDIIGPACPSLSNTHPQCCVKSTDQQGKEITLFQPAREFLPTIDEVFKRLVEITKDIKGAKVENHKFCVSVHYRNVEENNWTVIGQLVHDMLKQYPILRSTYGRKVLEVRPVIDWNKGKAVEFLLESLGLSERDDVLAIYIGDDKTDEDAFQVLRENKGGYGILVSSTRKQSNAFYSLRDPSQVMKFLEMLVNWKKKEEENNHQRKRHSF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1122 398 TIGRFAM T6PP: trehalose-phosphatase 227 380 IPR003337 GO:0003824|GO:0005992
Lele55g1122 398 FunFam Trehalose 6-phosphate phosphatase 230 389 - -
Lele55g1122 398 CDD HAD_TPP 123 374 - -
Lele55g1122 398 FunFam Trehalose 6-phosphate phosphatase 224 300 - -
Lele55g1122 398 Pfam Trehalose-phosphatase 125 370 IPR003337 GO:0003824|GO:0005992
Lele55g1122 398 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 124 343 IPR006379 -
Lele55g1122 398 MobiDBLite consensus disorder prediction 71 90 - -
Lele55g1122 398 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 45 391 IPR044651 GO:0004805|GO:0005992
Lele55g1122 398 SUPERFAMILY HAD-like 123 383 IPR036412 -
Lele55g1122 398 Gene3D - 122 202 IPR023214 -
Lele55g1122 398 Gene3D - 224 396 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1122 Lele-ChrLele55 17577704 17581371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1122 116 379 Trehalose Biosynthesis Gene Families AT1G70290 25.090 9.43e-10 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0367 53 3347565 3353415 Lele55g1122 55 17577704 17581371 hybridization
Lele54g0373 54 3320224 3322739 Lele55g1122 55 17577704 17581371 hybridization