Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1114 ATGGCCGACGAAGCCAAGGCAAAAGGTAATGCAGCTTTCTCTTCCGGTGATTTCTCCGCTGCCATCCGTCACTTCTCCGACGCCATCGCTCTTGCCCCTGATAACCATGTCCTCTATTCTAATCGATCCGCTGCGTATGCTTCCCTTCACAAATACTCCGAAGCTTTAGCCGACGCCAAGAAGACCGTCGAGCTCAAGCCCGATTGGTCTAAGGGTTACAGTCGTCTCGGCGCTGCTCATCGGGGTCTCGGCCAAAATGATGAGGCTATTGCTGCTTACAACAAGGGCCTTGAGATCGACCCTAACAATGAACCTCTTAAATCCGGCTTGACTGATGCAAAGGCGGCGGCTGCTTCTTCTTCGAGGTCTCGTTCGACGCCACTTCCGGACAATCCTTTTGGAGAGGCTTTCGCTGGACCTGAGATGTGGGCGAGGCTTACTGCTGATCCTACCACTAGAGCCTATCTTCAACAGCCTGATTTCGTGAAGATGATGCAAGATATTCAGAAAAATCCCAACAATTTGAACATGTATTTGAAGGATCAAAGAATCATGCAAGCTCTTGGGGTTTTGCTCAATCTCAAGATTCGTACCCCAACGGACGAAGCTGATATGCCTGAGTCTTCACCTTCTTCTCCGCCTCAAGAGAGGAAGAGAGCTGCTGAAGCAGAGCCTGCCAAGGAAAAGAAGAAGCAGCCGGAGCCTGAACCGGAGCCCATGGAAGTGACGGGAGAGGAGAGGGAAGCAAAGGAGAGGAAAGTTCAGGCTCAGAGAGAAAAGGAGGCTGGTAATGCTGCTTACAAAAAGAAGGATTTCGAAACAGCAATTCAACATTACTCCAAGGCTTTGGAATTGGATGATGAGGATATATCGTTTCTCACAAACCGTGCTGCTGTGTACTTGGAAATGGGAAATTTCGAAGAATGCATAAAAGATTGTGACAAGGCTGTCGAAAGGGGAAGAGAACTGAGATCAGACTTCAAGATGATAGCAAGAGCTTTGACAAGGAAGGGAACTGCCCTGGTCAAACTGGCGAAATGCTCAAAGGATTATGAATGTGCCATTGAGACTTTCCATAAAGCACTTACGGAGCATCGCAATCCTGACACATTGAAGAAACTGAATGAAGCTGAAAAGGCGAAGAAAGAACTTGAACAGCAAGAATACTTTGATCCAAAACTGGCTGATGAGGAGCGTGAAAAAGGTAATGAATTCTTCAAGCAGCAAAAGTATCCTGAGGCTGTGAAGTGTTACACAGAATCTTTAAGAAGGAACCCTAAGGATCCTAAGACATACAGTAACAGAGCTGCATGCTACACAAAACTTGGCGCAATGCCTGAGGGTTTGAAGGATGCTGAAAAATGCATTGAGCTTGATCCAACCTTCTCAAAAGGTTATTCTAGAAAAGGTGCCGTACAGTTTTTCATGAAGGAATATGATAAAGCCTTGGAAACATACCAGGAGGGATTGAAACATGACCCTAGCAATCAGGAGTTGCTTGATGGCATAAAACGATGTGTAGAACAAATTAATAAGGCCAGCCGCGGGGATTTATCACCTGAGGAATTGAAGGAGAGACAGGCCAAGGCAATGCAGGACCCAGAGATACAGAACATCCTTCAAGATCCTGTTATGAGACAGGTGTTAGTTGATTTCCAGGAAAATCCCAAAGCTGCCCAGGAACATACAAAGAATCCAATGGTGATGAACAAGATCCAAAAGCTGGTCGGTGCTGGAATTGTCCAGATGAAGTGA 1755 0.4644 MADEAKAKGNAAFSSGDFSAAIRHFSDAIALAPDNHVLYSNRSAAYASLHKYSEALADAKKTVELKPDWSKGYSRLGAAHRGLGQNDEAIAAYNKGLEIDPNNEPLKSGLTDAKAAAASSSRSRSTPLPDNPFGEAFAGPEMWARLTADPTTRAYLQQPDFVKMMQDIQKNPNNLNMYLKDQRIMQALGVLLNLKIRTPTDEADMPESSPSSPPQERKRAAEAEPAKEKKKQPEPEPEPMEVTGEEREAKERKVQAQREKEAGNAAYKKKDFETAIQHYSKALELDDEDISFLTNRAAVYLEMGNFEECIKDCDKAVERGRELRSDFKMIARALTRKGTALVKLAKCSKDYECAIETFHKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEEREKGNEFFKQQKYPEAVKCYTESLRRNPKDPKTYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYSRKGAVQFFMKEYDKALETYQEGLKHDPSNQELLDGIKRCVEQINKASRGDLSPEELKERQAKAMQDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNPMVMNKIQKLVGAGIVQMK 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1114 584 ProSiteProfiles TPR repeat profile. 256 289 IPR019734 GO:0005515
Lele55g1114 584 SMART tpr_5 70 103 IPR019734 GO:0005515
Lele55g1114 584 SMART tpr_5 2 35 IPR019734 GO:0005515
Lele55g1114 584 SMART tpr_5 429 462 IPR019734 GO:0005515
Lele55g1114 584 SMART tpr_5 290 323 IPR019734 GO:0005515
Lele55g1114 584 SMART tpr_5 36 69 IPR019734 GO:0005515
Lele55g1114 584 SMART tpr_5 395 428 IPR019734 GO:0005515
Lele55g1114 584 SMART tpr_5 331 368 IPR019734 GO:0005515
Lele55g1114 584 SMART tpr_5 463 496 IPR019734 GO:0005515
Lele55g1114 584 SMART tpr_5 256 289 IPR019734 GO:0005515
Lele55g1114 584 Pfam TPR repeat 263 304 - -
Lele55g1114 584 Pfam TPR repeat 402 443 - -
Lele55g1114 584 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Lele55g1114 584 Gene3D Tetratricopeptide repeat domain 393 508 IPR011990 GO:0005515
Lele55g1114 584 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Lele55g1114 584 Gene3D - 129 196 - -
Lele55g1114 584 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 516 584 - -
Lele55g1114 584 SUPERFAMILY TPR-like 8 503 IPR011990 GO:0005515
Lele55g1114 584 MobiDBLite consensus disorder prediction 101 136 - -
Lele55g1114 584 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Lele55g1114 584 SMART CBM 533 572 IPR006636 -
Lele55g1114 584 SMART CBM 149 188 IPR006636 -
Lele55g1114 584 ProSiteProfiles TPR repeat profile. 463 496 IPR019734 GO:0005515
Lele55g1114 584 MobiDBLite consensus disorder prediction 199 265 - -
Lele55g1114 584 MobiDBLite consensus disorder prediction 217 265 - -
Lele55g1114 584 Coils Coil 240 260 - -
Lele55g1114 584 Gene3D - 514 584 - -
Lele55g1114 584 FunFam Stress-induced phosphoprotein 1 253 387 - -
Lele55g1114 584 Pfam STI1 domain 140 193 IPR041243 -
Lele55g1114 584 Pfam STI1 domain 525 577 IPR041243 -
Lele55g1114 584 ProSiteProfiles TPR repeat profile. 429 462 IPR019734 GO:0005515
Lele55g1114 584 FunFam Putative stress-induced-phosphoprotein 1 129 197 - -
Lele55g1114 584 FunFam Stress-induced phosphoprotein 1 1 116 - -
Lele55g1114 584 Pfam Tetratricopeptide repeat 464 496 IPR001440 GO:0005515
Lele55g1114 584 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Lele55g1114 584 Gene3D Tetratricopeptide repeat domain 253 389 IPR011990 GO:0005515
Lele55g1114 584 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Lele55g1114 584 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Lele55g1114 584 PANTHER TPR REPEAT CONTAINING PROTEIN 2 556 IPR045248 -
Lele55g1114 584 Coils Coil 367 387 - -
Lele55g1114 584 Pfam Tetratricopeptide repeat 7 67 - -
Lele55g1114 584 ProSiteProfiles TPR repeat profile. 395 428 IPR019734 GO:0005515
Lele55g1114 584 FunFam hsp70-Hsp90 organizing protein 3-like 394 508 - -
Lele55g1114 584 MobiDBLite consensus disorder prediction 114 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1114 Lele-ChrLele55 17447766 17450595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1114 1 79 U-box Gene Family AT3G07370 30.380 9.61e-06 45.8