Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1113 ATGGGTGTTCGACCTCGACCCTCTCGTTCCCTTACTTCATCTTCTCTTTCTCAGTTCTTTGGAACTTCCCCAATTAAGTCTAAATCCTCCCAGCTCTCTTATTTGCGCCACCAGAGCAGACGAAACTTGTCTGTTTTCGCCATAGCTGCCGAAGATGCGAGTCGAGCTATTCCATTGAAAGATTATCGCAACATTGGTATCATGGCACACATTGATGCTGGAAAGACAACCACAACCGAAAGAATTCTCTACTATACAGGAAGAAACTACAAAATTGGAGAAGTGCATGAGGGAACAGCTACCATGGACTGGATGGAACAAGAACAAGAAAGAGGGATTACGATAACTTCTGCTGCAACCACCACATTTTGGAATAAGCACCGGATCAACATCATTGATACTCCTGGTCATGTTGACTTCACCCTTGAAGTGGAGCGAGCTCTTAGGGTGCTAGATGGAGCCATATGCTTGTTTGATAGTGTTGCTGGTGTGGAACCACAATCAGAAACTGTTTGGAGACAAGCTGATAAATATGGGGTTCCACGTATTTGTTTTGTTAACAAGATGGACCGTCTTGGAGCAAACTTTTTCCGAACAAGAGATATGATAGTGACAAACTTGGGCGCTAAACCACTCGTAATTCAGATTCCAATTGGTTCAGAAGATAACTTTAAGGGAGTTGTTGATCTTGTAAGAATGAAAGCTATAGTTTGGTCTGGAGAAGAGTTAGGTGCCAAGTTTTCTTATGAAGATATTCCAGAGGATCTTCTTGAGTTGGCTCAGGATTATCGATCCCAGATGATTGAAACAATAGTTGAGTTGGATGATCAAGCCATGGAGAACTACCTAGAAGGAAATGAACCAGATGAGGAAACCATCAAAAAATTAATTAGGAAGGGAACCATATCAGGAAACTTTGTGCCAGTAATGTGTGGCTCAGCTTTCAAAAACAAGGGGGTTCAACCGCTGCTTGATGCTGTTGTGGACTATCTACCATCACCGATTGAGTTGCCACCAATGAAGGGAACTGACCCTGAAAACCCAGAATTGGTAGTAGAAAGGAAAGCAAGTGATGATGAGTCATTTTCTGGATTAGCTTTTAAGATCATGAGTGATCCATTTGTTGGTTCCCTTACGTTTGTGAGGGTGTATTCTGGAAAGCTAACTGCAGGGTCTTATGCACTCAATGCAAACAAAGGGAAGAAGGAGAGAATTGGTAGACTATTGGAAATGCATGCTAACAGCAGGGAGGATGTTAAAGTAGCTTTAACAGGTGATATTATTGCTCTTGCAGGTTTAAAAGATACTATTACAGGTGAAACATTGTGTGACCCTGATAGTCCTGTCGTGCTTGAGCGCATGGATTTTCCTGATCCTGTGATAAAGGTTGCCATTGAACCCAAAACTAAGGCTGATGTTGACAAGATGGCAACTGGTTTAATTAAGCTCGCCCAAGAAGATCCTTCTTTCCACTTCTCTAGGGATGAAGAGATTAACCAGACGGTTATTGAAGGAATGGGAGAGTTGCATCTTGAAATCATTGTTGATCGACTCAAGAGAGAATTTAAGGTGGAAGCTAATGTTGGTGCACCCCAAGTGAACTACAGGGAAAGCATTTCCAAAGTCTCAGAAGTGAAGTATGTTCACAAGAAACAGTCAGGAGGACAAGGTCAATTTGCGGATGTCACTATTCGTTTTGAACCCATGGAGGCAGGTGGTGGGTATGAGTTCAAGAGTGAGATCAAAGGAGGTGCTGTACCGAAAGAATACATTCCGGGAGTGATTAAAGGATTGGAGGAGTGTATGAGCAATGGTATACTCGCTGGATTTCCAGTCGTTGATGTACGCGCAGTACTTGTAGATGGATCTTACCATGATGTAGATTCAAGTGTCTTGGCATTCCAGTTGGCAGCAAGAGGAGCTTTCCGTGATGGAATGAGAAAAGCAGGACCAAAGATGCTTGAACCAATTATGAAAGTTGAAGTGGTTACTCCTGAAGATCATCTAGGAGATGTAATTGGTGATCTCAACTCAAGAAGAGGTCAGATTAACAGTTTTAGTGACAAGCCCGGTGGCCTAAAGGTGGTTGATGCTCTGGTTCCTCTGGCTGAGATGTTTCAGTATGTGAGTACACTGAGGGGGATGACGAAGGGACGTGCGTCTTACACAATGCAATTAGCCAAGTTTGATGTGGTGCCTCAGCACATCCAAAACCAACTCTCCTCAAAGGAGCAAGAAGTTGCTGCTTAA 2250 0.4311 MGVRPRPSRSLTSSSLSQFFGTSPIKSKSSQLSYLRHQSRRNLSVFAIAAEDASRAIPLKDYRNIGIMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVIQIPIGSEDNFKGVVDLVRMKAIVWSGEELGAKFSYEDIPEDLLELAQDYRSQMIETIVELDDQAMENYLEGNEPDEETIKKLIRKGTISGNFVPVMCGSAFKNKGVQPLLDAVVDYLPSPIELPPMKGTDPENPELVVERKASDDESFSGLAFKIMSDPFVGSLTFVRVYSGKLTAGSYALNANKGKKERIGRLLEMHANSREDVKVALTGDIIALAGLKDTITGETLCDPDSPVVLERMDFPDPVIKVAIEPKTKADVDKMATGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKVSEVKYVHKKQSGGQGQFADVTIRFEPMEAGGGYEFKSEIKGGAVPKEYIPGVIKGLEECMSNGILAGFPVVDVRAVLVDGSYHDVDSSVLAFQLAARGAFRDGMRKAGPKMLEPIMKVEVVTPEDHLGDVIGDLNSRRGQINSFSDKPGGLKVVDALVPLAEMFQYVSTLRGMTKGRASYTMQLAKFDVVPQHIQNQLSSKEQEVAA 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1113 749 Pfam Elongation factor Tu domain 2 376 443 IPR004161 GO:0005525
Lele55g1113 749 Pfam Elongation factor G, domain IV 531 649 IPR005517 GO:0005525
Lele55g1113 749 SUPERFAMILY Translation proteins 316 456 IPR009000 -
Lele55g1113 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 333 IPR027417 -
Lele55g1113 749 TIGRFAM EF-G: translation elongation factor G 54 744 IPR004540 GO:0003746|GO:0005525|GO:0006414
Lele55g1113 749 Gene3D - 537 739 IPR014721 -
Lele55g1113 749 Gene3D Translation factors 345 458 - -
Lele55g1113 749 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 60 335 IPR000795 GO:0003924|GO:0005525
Lele55g1113 749 Pfam Elongation factor G C-terminus 653 739 IPR000640 -
Lele55g1113 749 SMART EFG_IV_2 532 650 IPR005517 GO:0005525
Lele55g1113 749 SUPERFAMILY EF-G C-terminal domain-like 456 533 IPR035647 -
Lele55g1113 749 SMART EFG_C_a 652 740 IPR000640 -
Lele55g1113 749 CDD EFG_mtEFG_II 362 444 - -
Lele55g1113 749 FunFam Elongation factor G 537 667 - -
Lele55g1113 749 CDD EFG_mtEFG1_IV 535 650 IPR005517 GO:0005525
Lele55g1113 749 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 37 745 - -
Lele55g1113 749 Pfam Elongation Factor G, domain III 456 529 IPR041095 -
Lele55g1113 749 FunFam Elongation factor G 344 459 - -
Lele55g1113 749 FunFam Elongation factor G 460 536 - -
Lele55g1113 749 SUPERFAMILY Ribosomal protein S5 domain 2-like 531 651 IPR020568 -
Lele55g1113 749 Gene3D - 656 727 - -
Lele55g1113 749 SUPERFAMILY EF-G C-terminal domain-like 655 744 IPR035647 -
Lele55g1113 749 CDD EFG_mtEFG_C 655 733 IPR035649 -
Lele55g1113 749 Gene3D Elongation Factor G (Translational Gtpase), domain 3 459 536 - -
Lele55g1113 749 CDD EF-G 64 334 - -
Lele55g1113 749 FunFam Elongation factor G 656 727 - -
Lele55g1113 749 Hamap Elongation factor G [fusA]. 58 744 IPR004540 GO:0003746|GO:0005525|GO:0006414
Lele55g1113 749 FunFam Elongation factor G 53 344 - -
Lele55g1113 749 CDD EFG_III 457 532 IPR009022 -
Lele55g1113 749 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 103 118 IPR031157 -
Lele55g1113 749 Gene3D - 53 344 IPR027417 -
Lele55g1113 749 Hamap Elongation factor G, chloroplastic. 52 749 IPR030848 GO:0003746|GO:0006414|GO:0009507
Lele55g1113 749 Pfam Elongation factor Tu GTP binding domain 61 333 IPR000795 GO:0003924|GO:0005525
Lele55g1113 749 PRINTS GTP-binding elongation factor signature 130 140 IPR000795 GO:0003924|GO:0005525
Lele55g1113 749 PRINTS GTP-binding elongation factor signature 64 77 IPR000795 GO:0003924|GO:0005525
Lele55g1113 749 PRINTS GTP-binding elongation factor signature 110 118 IPR000795 GO:0003924|GO:0005525
Lele55g1113 749 PRINTS GTP-binding elongation factor signature 146 157 IPR000795 GO:0003924|GO:0005525
Lele55g1113 749 PRINTS GTP-binding elongation factor signature 182 191 IPR000795 GO:0003924|GO:0005525
Lele55g1113 749 TIGRFAM small_GTP: small GTP-binding protein domain 62 232 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1113 Lele-ChrLele55 17442230 17446147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1113 61 720 Eukaryotic Initiation Factors Gene Family AT1G56070 25.275 5.63e-43 165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0376 53 3532071 3536094 Lele55g1113 55 17442230 17446147 hybridization
Lele54g0380 54 3404450 3410359 Lele55g1113 55 17442230 17446147 hybridization