Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1110 ATGGGGAGACAACCTTGCTGTGACAAACTTGAAGTGAAGAAAGGACCATGGACTGCAGAAGAAGACAAGAAGCTCATCAACTTCATTCTCATTAATGGTCAATGTTGCTGGCGAGCCGTTCCGAAGCTCGCCGGCCTCAGGCGATGCGGCAAGAGTTGTAGGCTTCGTTGGACTAACTATCTTCGTCCTGATTTGAAGCGAGGCCACCTCACTGATGCAGAAGAGAACCTCGTGATCGATCTCCATTCTCACCTTGGCAACAGGTGGTCTATGATAGCGGCGAAATTACCAGGAAGAACAGACAATGAGATTAAAAATCACTGGAACACACACATCAAGAAGAAGCTGCTTAAGATGGGTATTGATCCTGTTACTCATGAGCCTCTCAACAAAGAACCTGTTTCCCAGGAGGATAATTCATCCCCTGCAGAGAATTTGTCACAATCTGACAGTGATCACAATCACCAGGTGAATGTTCTGAACTCAAAGGAGAATTCAATCTCATCATCATCACCAACTGAAAATTCATGTGGGGAAGAACCACTTTCACGAGAAATTAACCATCGCCACGACGATGACTTGTGGCCGGACGAAACTTCGCTGGTGGATTCATTATGGGAAAGTATACCTGATGCACAGAATGAGAATTATGACTTGGCACTGTCATCATCTTGGGAGGATACTAGTTCCAGCTGGTTATTGGACTCTCAGGACTTTGGTTTTAATTGCTTCAATGAGATTGAGCCTCATGCCCTCCTTCAGACTTTAGGAATGGAGGAGGAGAAGGAACATTAG 795 0.4541 MGRQPCCDKLEVKKGPWTAEEDKKLINFILINGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGHLTDAEENLVIDLHSHLGNRWSMIAAKLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKEPVSQEDNSSPAENLSQSDSDHNHQVNVLNSKENSISSSSPTENSCGEEPLSREINHRHDDDLWPDETSLVDSLWESIPDAQNENYDLALSSSWEDTSSSWLLDSQDFGFNCFNEIEPHALLQTLGMEEEKEH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1110 264 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele55g1110 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele55g1110 264 Gene3D - 71 116 - -
Lele55g1110 264 FunFam MYB transcription factor 11 67 - -
Lele55g1110 264 Pfam Myb-like DNA-binding domain 70 111 IPR001005 -
Lele55g1110 264 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele55g1110 264 FunFam transcription factor MYB80 69 129 - -
Lele55g1110 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele55g1110 264 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lele55g1110 264 CDD SANT 71 112 IPR001005 -
Lele55g1110 264 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele55g1110 264 MobiDBLite consensus disorder prediction 162 180 - -
Lele55g1110 264 MobiDBLite consensus disorder prediction 134 153 - -
Lele55g1110 264 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 210 - -
Lele55g1110 264 SMART sant 66 114 IPR001005 -
Lele55g1110 264 SMART sant 13 63 IPR001005 -
Lele55g1110 264 MobiDBLite consensus disorder prediction 162 181 - -
Lele55g1110 264 CDD SANT 16 61 IPR001005 -
Lele55g1110 264 Gene3D - 11 67 - -
Lele55g1110 264 MobiDBLite consensus disorder prediction 125 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1110 Lele-ChrLele55 17188024 17188966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1110 1 244 MYB Transcription Factor Family AT4G12350 53.521 3.81e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele55g1110 Myb_DNA-binding 3.6e-13 CL0123