Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1075 ATGCCTTGCCAGTTTCTTCCTCGCATTCCATTGGCCTCAACTTGTCCCCACGTGACTGGCAACGGACAGCTTCGCTCGCTGTTCTCCGCCTACTCCACGCCCCTGTCCCAGAATTGAAAGAAGTGTCGACTCCAGATTTCGCTGAAGAAATCGATTGCTTCGATTCGTGTTTTGGGGGAAGTCGCCGAAGATATGGTGAGGGGAAAAACTCAGATGAAGCGAATCGAGAATGATACGAGCAGGCAAGTAACTTTTTCAAAGAGAAGGAATGGGCTGTTGAAGAAGGCGTTTGAGCTTTCTGTACTGTGTGAAGCAGAAGTTGCACTCATAATTTTCTCGCCCAGAGGAAAGCTCTATGAATTCTCCAGTTCTAGTATAAATAAAACAGTTGAACGCTATCAAAAGAAAGTCAAGGACCTGGGTCTCTGCTCTAGACGAATCCAAGATAACACACAGCGTGGTAAGGATGGAACCATCGGCATACAAAAGAAGCTTGAGCATCTTGATATTTCGAAAAGGAAGCTTTTGGGAGATTGTTTGGATGCATGTACCGTTGAGGAGTTAAATCAGATAGAGAACCAGTTGGAACGAAGCTTAACAAAAATTAGGGCACGAAAGAATCAATTGTTCAGGGAGCAGATTCAGCAACTAAGGGAAGAGCAAAAATGCCTTCTGGAAGAAAATAACAAGTTACGAGAGCAGTGTGGGATTGAAGAGCGCGTATCAACAAGGAAAGAGGATGAGAATGAGGTGGTGACGGAGTTGTTCATAGGGCCACCTGAGAGACGAATCCCGTAA 798 0.4536 MPCQFLPRIPLASTCPHVTGNGQLRSLFSAYSTPLSQNXKKCRLQISLKKSIASIRVLGEVAEDMVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSPRGKLYEFSSSSINKTVERYQKKVKDLGLCSRRIQDNTQRGKDGTIGIQKKLEHLDISKRKLLGDCLDACTVEELNQIENQLERSLTKIRARKNQLFREQIQQLREEQKCLLEENNKLREQCGIEERVSTRKEDENEVVTELFIGPPERRIP 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1075 265 ProSiteProfiles K-box domain profile. 151 241 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele55g1075 265 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 74 121 IPR002100 GO:0003677|GO:0046983
Lele55g1075 265 FunFam Agamous-like MADS-box protein AGL13 77 143 - -
Lele55g1075 265 Coils Coil 185 234 - -
Lele55g1075 265 CDD MADS_MEF2_like 67 135 IPR033896 GO:0000977|GO:0045944
Lele55g1075 265 ProSiteProfiles MADS-box domain profile. 65 125 IPR002100 GO:0003677|GO:0046983
Lele55g1075 265 ProSitePatterns MADS-box domain signature. 67 121 IPR002100 GO:0003677|GO:0046983
Lele55g1075 265 PANTHER SERUM RESPONSE FACTOR HOMOLOG 67 220 - -
Lele55g1075 265 SMART madsneu2 65 124 IPR002100 GO:0003677|GO:0046983
Lele55g1075 265 Pfam K-box region 153 235 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele55g1075 265 PRINTS MADS domain signature 87 102 IPR002100 GO:0003677|GO:0046983
Lele55g1075 265 PRINTS MADS domain signature 67 87 IPR002100 GO:0003677|GO:0046983
Lele55g1075 265 PRINTS MADS domain signature 102 123 IPR002100 GO:0003677|GO:0046983
Lele55g1075 265 Gene3D - 77 144 IPR036879 GO:0003677|GO:0046983
Lele55g1075 265 SUPERFAMILY SRF-like 67 136 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1075 Lele-ChrLele55 15532439 15540858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1075 65 263 MADS-box Gene Family AT4G22950 59.716 3.19e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele55g1075 K-box 1.9e-22 No_clan