Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1062 ATGAGACAAGCAGGAGCATATTCAGGGCTACACTGTGGGGGGATGGGGCCTCACGCGCTGCCATTGGCGAGGATAAAGAAGATAATGAAGAAATCAGGCGTTGACGTCAAGATGATATCAGGTGAGGCTCCTATTGCTTTTGCCAAAGCTTGTGAGCTCTTCATGGAAGAACTCACCAGAAGGTCCTGGATCATGACCACTCACTCCAAGCGGAGGACCCTCCTCAAAGACGACGTCGCTTCCGCCATCATTGCCACCGATCTCTTCGACTTCTTGATCTCTCTCGTCACCGGCGCCTCTCCCTTACCTCCATCGAATCTTAAACCCTCATGTCATGTTTGA 342 0.5146 MRQAGAYSGLHCGGMGPHALPLARIKKIMKKSGVDVKMISGEAPIAFAKACELFMEELTRRSWIMTTHSKRRTLLKDDVASAIIATDLFDFLISLVTGASPLPPSNLKPSCHV 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1062 113 SUPERFAMILY Histone-fold 15 92 IPR009072 GO:0046982
Lele55g1062 113 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 20 83 IPR003958 -
Lele55g1062 113 Gene3D Histone, subunit A 11 97 IPR009072 GO:0046982
Lele55g1062 113 FunFam Nuclear transcription factor Y subunit C 4 97 - -
Lele55g1062 113 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 18 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1062 Lele-ChrLele55 14002530 14002871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1062 11 96 CCAAT-HAP5 Transcription Factor Family AT1G56170 59.302 3.43e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele55g1062 CBFD_NFYB_HMF 1.4e-16 CL0012