Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1060 ATGTCGTTTATTGGGACCCAACAGAAATGCAAGGCTTGTGATAAAACTGCTCATTTTGTGGATTCTGTTTCAACAGATGGAGTTATTTACCCTAAGACTTGCTTCAAATCCAGTCAGTGTAACGGCGTCCTTGCGAGTGAGCTGATTGAATTACCAACGTACGTACAGACAAGGGCACCAAGCAAATTGTCGGCCATGTTCTCTGGAACTGTAGACAAATGCTCTTCTTGCAAGAAAACCGTCTACCCACTTGAAAAGGTAACAGTAGAAGGAGAATTCTTTCACAAATCATGCTTCAGGTGTGCTCAAGGAGGCTGTTTTCTGAGCCCATCAAACTATGCGGCACTTGATGGGTTCATATACTGTAAGCACCATTTTGCTCAGTTGTTCAAGGAGAAAGGCTGCTATTCCCATGTCTCCAAATCTTCTTCCACGAAGAAGAACAACGAAACTCAAAAGCTTGAAGCTGATTCTGCTGATACACCTCCTCCGATAAACCATGATGATGAACAGCATGCAGTTTCTGATAGTTCTTTATAA 540 0.4259 MSFIGTQQKCKACDKTAHFVDSVSTDGVIYPKTCFKSSQCNGVLASELIELPTYVQTRAPSKLSAMFSGTVDKCSSCKKTVYPLEKVTVEGEFFHKSCFRCAQGGCFLSPSNYAALDGFIYCKHHFAQLFKEKGCYSHVSKSSSTKKNNETQKLEADSADTPPPINHDDEQHAVSDSSL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1060 179 MobiDBLite consensus disorder prediction 162 179 - -
Lele55g1060 179 FunFam LIM domain and actin-binding 1 68 138 - -
Lele55g1060 179 Pfam LIM domain 74 129 IPR001781 -
Lele55g1060 179 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 100 139 - -
Lele55g1060 179 SMART lim_4 73 125 IPR001781 -
Lele55g1060 179 MobiDBLite consensus disorder prediction 140 179 - -
Lele55g1060 179 ProSiteProfiles LIM domain profile. 72 132 IPR001781 -
Lele55g1060 179 Gene3D Cysteine Rich Protein 69 138 - -
Lele55g1060 179 PANTHER OS06G0237300 PROTEIN 5 44 IPR045268 -
Lele55g1060 179 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lele55g1060 179 Gene3D Cysteine Rich Protein 2 57 - -
Lele55g1060 179 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 66 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1060 Lele-ChrLele55 13995959 13996992 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele55g1060 LIM 1.3e-11 CL0167