Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1054 ATGGCTGCTGCTTCGTCCCGTAACGGTGGAAGCAACGCCTACGACGTCCCTTGGGTTGAGAAGTATCGACCCTCCAAGGTCGCCGACATCGTCGGTAATGAAGATGCCGTCTCCAGGCTCCAAGTTATTGCTCGCGACGGCAACATGCCCAATTTGATATTAGCGGGTCCTCCTGGAACTGGGAAAACTACTAGTGTTCTAGCGCTTGCACATGAACTTCTGGGACAAAATTTCAGGGAAGCTGTTCTTGAGCTCAATGCGTCAGATGATAGAGGAATTGATGTTGTGAGGAACAAGATAAATATGTTCGCTCAAATGAAAGTGACACTACCTCCTGGGCGGCACAAAATAGTAATACTGGATGAAGCTGACAGCATGACATCAGGAGCTCAGCAAGCTTTGAGAAGGACTATGGAAATATATTCAAATTCCACTCGTTTTGCTCTTGCATGCAATACATCATCTAAAATTATTGAACCAATTCAGAGTAGATGTGCTATTGTGCGATTTTCTCGATTATCTGATCAAGAAATACTTGGTCGTCTCATGGTAGTGGTTGAAGCTGAGAAGGCACTTGAGCACTTTTTTATGTATAAGTTTCTTCCTCTGAAGTGGTTTGCAGAATGTCCCTATGTTCCTGAAGGCCTTGAAGCCATCATTTTCACTGCGGATGGTGATATGAGGAAGGTGTTGAATAACTTGCAGGCAACACACAGTGGGTTCCGATTTGTTAACCAAGAAAATGTATTCAAGGTTTGTGATCAACCGCATCCATTGCATGTGAAAAATATGGTGCGTAATGTGATTGAAGGAAACTTTGATGAGGCTTGCGTGGGCCTCAAGCAGCTTTATGATTTGGGATACTCACCCACTGATATAATCACAATTTTTCGTATAATAAAAAATTATGATATGGCTGAGTACCTGAAACTAGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGTTCTTATCTTCAGCTCTGTGGCCTGTTGGCTAAGTTTTCTCTGGTTCGAGAAACAGCTAAAGCTGTTTGA 1056 0.429 MAAASSRNGGSNAYDVPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSVLALAHELLGQNFREAVLELNASDDRGIDVVRNKINMFAQMKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVEAEKALEHFFMYKFLPLKWFAECPYVPEGLEAIIFTADGDMRKVLNNLQATHSGFRFVNQENVFKVCDQPHPLHVKNMVRNVIEGNFDEACVGLKQLYDLGYSPTDIITIFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKFSLVRETAKAV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1054 351 Gene3D - 11 173 IPR027417 -
Lele55g1054 351 SUPERFAMILY post-AAA+ oligomerization domain-like 255 345 IPR008921 GO:0003677|GO:0006260
Lele55g1054 351 CDD HLD_clamp_RFC 173 253 - -
Lele55g1054 351 FunFam replication factor C subunit 2 256 347 - -
Lele55g1054 351 Pfam ATPase family associated with various cellular activities (AAA) 52 170 IPR003959 GO:0005524|GO:0016887
Lele55g1054 351 CDD AAA 31 168 - -
Lele55g1054 351 FunFam Replication factor C subunit 4 10 173 - -
Lele55g1054 351 SMART AAA_5 48 174 IPR003593 -
Lele55g1054 351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 254 IPR027417 -
Lele55g1054 351 FunFam Replication factor C subunit 4 207 255 - -
Lele55g1054 351 Pfam Replication factor C C-terminal domain 256 340 IPR013748 -
Lele55g1054 351 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 17 335 - -
Lele55g1054 351 Gene3D - 207 255 - -
Lele55g1054 351 Gene3D - 256 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1054 Lele-ChrLele55 11562998 11567951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1054 12 350 Core DNA Replication Machinery Family AT1G63160 84.706 0.0 593