LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele55g1048	ATGGATTTTCTCACAGAACATACATTCGATGTTTCTTCTTCTTCTTCGTCTTCATCTTCATCTGAGGCGAGCTCATCGGATGGAGAGCCAAAATTGTTACTGGCGTCGGAGCGACCAAAGAAGCGAGCGGGACGAAGGGTTTTCAAGGAGACGAGGCATCCCGTGTACAGAGGAGTGCGACGGAGGAACAACGACAAGTGGGTTTGCGAGGTTCGTGTGCCGAACGGTAAGACCAGGATTTGGCTCGGGACATACTCAACGGCGGAGATGGCCGCTCGAGCTCATGATGTGGCGGCACTGGCTCTTCGTGGCAAGTCGGCTTGCCTGAATTTTGCTGACTCCTCTTGGCAGTTGCCTCTACCGGAATCAACCAATGCGGCGGAGATCAGACGGGTGGCAGCTCTCGCTGCTCAGGAGTTCGGCGGGATCAGTAGTGCTGATTCTGAAGTTTGCAGTTGTAGTAGTACTACAACAATCCTCGTCGATGATGAAGTCATGGGAGATGCATCAAATCTAAAGGACTACCGTGAGGAAGAAGCGAAGTATATTGATCAAACTCCGGCAGTGTTGTCGACGGAGTTTGACGAGCTCCTTCCTTTACTAGAGAGTATGGCGGAGGAGCCCCTCCGATCGCCCCCATCTGTTAGCCCATATGGTTGGAGCTGGAATGACGTGGAGGTTGAAACTGAGGTCTCACTGTGGCATTATTGA	711	0.5218	MDFLTEHTFDVSSSSSSSSSSEASSSDGEPKLLLASERPKKRAGRRVFKETRHPVYRGVRRRNNDKWVCEVRVPNGKTRIWLGTYSTAEMAARAHDVAALALRGKSACLNFADSSWQLPLPESTNAAEIRRVAALAAQEFGGISSADSEVCSCSSTTTILVDDEVMGDASNLKDYREEEAKYIDQTPAVLSTEFDELLPLLESMAEEPLRSPPSVSPYGWSWNDVEVETEVSLWHY	236

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele55g1048	236	MobiDBLite	consensus disorder prediction	1	45	-	-
	Lele55g1048	236	Gene3D	AP2/ERF domain	55	113	IPR036955	GO:0003700\|GO:0006355
	Lele55g1048	236	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	12	236	IPR045277	GO:0003700
	Lele55g1048	236	CDD	AP2	56	114	IPR001471	GO:0003700\|GO:0006355
	Lele55g1048	236	SUPERFAMILY	DNA-binding domain	55	114	IPR016177	GO:0003677
	Lele55g1048	236	MobiDBLite	consensus disorder prediction	7	27	-	-
	Lele55g1048	236	FunFam	Ethylene-responsive transcription factor 2	54	113	-	-
	Lele55g1048	236	Pfam	AP2 domain	54	104	IPR001471	GO:0003700\|GO:0006355
	Lele55g1048	236	SMART	rav1_2	55	118	IPR001471	GO:0003700\|GO:0006355
	Lele55g1048	236	PRINTS	Ethylene responsive element binding protein signature	78	94	IPR001471	GO:0003700\|GO:0006355
	Lele55g1048	236	PRINTS	Ethylene responsive element binding protein signature	56	67	IPR001471	GO:0003700\|GO:0006355
	Lele55g1048	236	ProSiteProfiles	AP2/ERF domain profile.	55	112	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele55g1048	Lele-ChrLele55	11039283	11039993	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele55g1048	7	236	AP2-EREBP Transcription Factor Family	AT4G25470	48.485	1.98e-61	190

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele55g1048		AP2	4.5e-14	CL0081