Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1041 ATGAGTGAGAGAGAAACATGCGAAGAACAAGAAGGTGAGCAGGAGCAGAGCCATCTTTGGTGCGTAGAGGATCGATCCTGCAGAGAAATCAGAAGGCCTCTTTTTGAAACTGAAGGCAATTATTTCCAGATGGTGCCCGAGAACATGAAGAAACAACTTGCTTTGGCTGTGAGGAGCATCCAATGGAGCTATGCAGTATTCTGGTCTTCTAGTAGCCAACCTGGGATTTTGAAATGGGGTGAGGGATTTTACAATGGTGACATAAAGACTAGGAAAACAAGTCAGGCAGTACAGCTTAGTTCCGACCAAATTGGTTTGCAGAGGAGTGAGGAGTTGAGAGAGCTATTCGAGTCCCTCGCAACTGCAGAATCCACCCCACAAATTAAAAGGCCTTCAACTGCACTAAGCCCTGAAGACCTCACTGATACTGAGTGGTATTACTTGGTTTGCATGTCCTTTGTATTCAATATTGGCCAAGGATTACCTGGACGAACTCTAGTGAATTGTCAACCTCTTTGGGTTTACAATGCCCCTTATGCTGATTGTAGTGTTTTTAGTCGCACTCTGCTTGCAAAGAGTGCATCCATTCGGACTGTGGTATGCTTCCCTTTTCTGGAAGGTGTTGTTGAACTTGGAACAAGTGATTTGATCTTAGAAGACCTCAGTCTCATTCAACGTATAAAAACTTGTTTCCTGGATATTCTGAATACTAATAAGTCTGGTTCTACATTTAAAACGAGAAACAATAAAGCTATTGCTTCTGTAGCATTTGGCCAAAGTGCTTATGATGCCAAATTACCAGAAGTGGGATCTGCTGTAAACAGTAAAACTTCTGCCAATAGTTCAAATGAGATTGAAGCGAACCGACTGGCAGATGAGACGTGTATGGATGAAAGAGTAAATGGTGGTGCTTCTCAGGTCCAAAGCTTGCAAGTTATGGATGATGAATTAAGTAATGATGCCCGTAACTCGATGGCTTCTAGTGACTGTAGTTCTCAAACTCTTGCTGATCCTGAAAAGACTGCCTCTGGTCCCAAGGATCAAAACCCAGCTGACCATTATAAACAATATATCCAACAGTGCAATAAAACAAAAATGACCTTAAACGATCGCCGAAATGATGACTGGCATTATCAAAAAGTTCTTTCTGCAGTTATAAAAGACTCAGACCAGTTAGCTATTAGAGCACATTTTCAAAGTAGTGATAAGCAATCCAGCTTTCTTAGTTATAAGAAGGGAGGATCAATGAGTTGTCAAAGGCTAATTAGAGGAGGAAACCCACAGAAGTTGTTGAAGAAGCTATTGTTTGAAGTTCCTCGGATGCATATGGACGTGCTTCTCGAGTGTCAAGAAGAAAATGATTACAAAGAGAGAATGAGACCAGAGGTTGATGAAATTGGTATGAACCATGTATTGTCAGAAAGAAGGAGAAGGGCAAAACTAAATGAAAGGCTTTTAACCCTTAGATCAATGGTCCCTTCAGTTAGTAAGGATGACAAAGTTTCAATACTAGACGATGCGATCCAATACCTTAGAAAGCTCGAGAAGAAGGTTAGAGAGCTGGAAGCATGTAAGGAGCTAATAGATTTAGAAACCAAAGCTAAAAAAACACCTCAAGATATGGTAGAGAGGACATCTGATAATTATTTTAACAGAACTGATAATGGCACGAAGCTAATGAATAACAAGAGAAAGGCATGTAACATTGAAGAGACGGGGCAAGAGAATGATTCGGTTGCGCTAAATGACAGTTCTGCTAGTAGCATTACTATCAGTTCGAAGGACCCCGATGTTTTGATCGAAATGAAATGTCCATGGATAGAAGGAGTGGTGATGAAAGTTATGGAAGCACTTAGGAGTTTCCACTTGGATTTACGATCAATTCAGTCATCAGAAGCTGATGGGATTCTTCATATAACCATTAGATCTCAGTGGAGAGGATCAACCATTGCATCGGTAAAAACGATAAAACAAGCGCTGCAAAAAGTGGCTCGGAACTGTTGA 2004 0.4097 MSERETCEEQEGEQEQSHLWCVEDRSCREIRRPLFETEGNYFQMVPENMKKQLALAVRSIQWSYAVFWSSSSQPGILKWGEGFYNGDIKTRKTSQAVQLSSDQIGLQRSEELRELFESLATAESTPQIKRPSTALSPEDLTDTEWYYLVCMSFVFNIGQGLPGRTLVNCQPLWVYNAPYADCSVFSRTLLAKSASIRTVVCFPFLEGVVELGTSDLILEDLSLIQRIKTCFLDILNTNKSGSTFKTRNNKAIASVAFGQSAYDAKLPEVGSAVNSKTSANSSNEIEANRLADETCMDERVNGGASQVQSLQVMDDELSNDARNSMASSDCSSQTLADPEKTASGPKDQNPADHYKQYIQQCNKTKMTLNDRRNDDWHYQKVLSAVIKDSDQLAIRAHFQSSDKQSSFLSYKKGGSMSCQRLIRGGNPQKLLKKLLFEVPRMHMDVLLECQEENDYKERMRPEVDEIGMNHVLSERRRRAKLNERLLTLRSMVPSVSKDDKVSILDDAIQYLRKLEKKVRELEACKELIDLETKAKKTPQDMVERTSDNYFNRTDNGTKLMNNKRKACNIEETGQENDSVALNDSSASSITISSKDPDVLIEMKCPWIEGVVMKVMEALRSFHLDLRSIQSSEADGILHITIRSQWRGSTIASVKTIKQALQKVARNC 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1041 667 Gene3D - 465 526 IPR036638 GO:0046983
Lele55g1041 667 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 468 528 IPR036638 GO:0046983
Lele55g1041 667 Coils Coil 504 531 - -
Lele55g1041 667 MobiDBLite consensus disorder prediction 319 352 - -
Lele55g1041 667 PANTHER TRANSCRIPTION FACTOR TT8 45 665 - -
Lele55g1041 667 Pfam Helix-loop-helix DNA-binding domain 469 515 IPR011598 GO:0046983
Lele55g1041 667 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 465 514 IPR011598 GO:0046983
Lele55g1041 667 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 49 231 IPR025610 -
Lele55g1041 667 MobiDBLite consensus disorder prediction 319 339 - -
Lele55g1041 667 SMART finulus 471 520 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1041 Lele-ChrLele55 9995056 9999995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1041 45 667 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 45.399 2.66e-173 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele55g1041 bHLH-MYC_N 2.1e-47 CL0161