Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1039 ATGAGCAGAAAAACAACGAAAACATCTGTGTGTTTTCCTGGGCATCCTGTATTGAGTTATGAATTCTGGGTGATTCCAATGGGGAAAGGTAGACCTAGGGCTGTGGAAAAAGGTGTAGCAGGGCAGAGTCTCAGTGTTTCATCGTCTGGGTCACTGAATATACCGTCAGCGCCTGTATATTTTCCCACCGAGGATGAGTTCACAGACCCCTTGGAATATATTTATAAGATTAGACCTGAAGCTGAGCCATATGGAATTTGCAAGATTGTACCTCCAAAGAGTTGGAAACCGCCATTTGCATTGGATCTAGATTTTTTTACTTTCCCCACTAAAACACAGGAAATTCACAAGTTACAGGCTCGTCCTGCTGCGTGTGACTCCAAGACTTTTGAGTTGGAGTACTCTAGGTTTTTAGAGGATCACTGTGGTAAAAAGTCAAGGAAGAAAATTTTATTTGAAGGGGAAGAACTGGACTTGTGCATACTGTTTAATTCTGTTAAGAGATTTGGTGGATATGATAAGGTTGTGAAGGAAAAGAAATGGGGGGATGTTTCAAGGTTTGTAAGGCCAGGAAGAAAAATGACAGACTGTGCAAAGCATGTCCTATCACAATTGTACTGTGAACATTTGTATGATTATGAGAATTTCTATAATCAACTGAATCAAGGGACAGGTAAGAAAGGCATGCTTGAGGGTGAAAAAAGTGAGCATTGTGTTCGGTCTTCAGGATCCAAGAGGATGAGAAGTTCTGATTGTTTGAAAGTTAAGGATTGTAAAGTGCAGGAGGAAGAACATGACCAGATTTGTGAGCAATGCAGAAGTGGTTTGCATGGGGATGTGATGCTTTTGTGTGATAGGTGTGATAAGGGCTGGCATATATATTGTCTTTCACCGCCCTTGAAGCAAATTCCTCCAGGAAACTGGTATTGCTTTAATTGCTTGAATTCTGACAGGGACAGCTTCGGTTTTGTGCCTGGTAAGCAGTACAACTTGGAAGCCTTTAGACGTGTAGCTGATCGGTCAAGGAGGAGATGGTTTGGACCAGGACCTGTTTCAAGGGTGCAAATGGAGAAGAAATTTTGGGATATTGTAGAGGGATCGGTTGGTGAGGTTGAGGTGATGTATGGAAGTGATCTGGATACGTCTGTCTTTGGAAGTGGTTTTCCACGCTCAACTGTTCAGAAACCAGAGTCAATTGATCCAAAATTATGGGATGAATACTCATCTAACCCATGGAATCTTAACAATTTGCCTAAGTTAAAAGGGTCAATGCTTCAAGCTGTTCATCATAATATCACTGGCGTGATGGTACCCTGGCTGTATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCATTGCTTTTACTCAATAAATTATCTACACTGGGGAGAGCCAAAATGCTGGTACAGTGTTCCTGGTAGTGAAGCCGGTGCTTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGATCTTTTCGATGCGCAACCAGATCTGCTTTTTCAGCTTGTAACTATGTTAAACCCATCTGTTTTGCAAGAAAATGGAGTTCCAGTCTACAGCATAATTCAGGAGCCTGGGAATTTTGTTATTACCTTTCCCAGATCATACCATGGAGGTTTTAATCTCGGCTTGATTGCATTGTCAGGTTTAAATTGCGCAGAGGCAGTTAATTTTGCCCCTGCTGACTGGCTACCTTATGGTGCATTTGGAGCTGATCTTTACCAACGATATCACAAAGCTGCTGTCTTGTCTCATGAGGAGCTTCTTTGCGTAGTAGCCCAGTACAGTGACATTGATTCCAGAGCATCTCCTTATTTGAAGAAAGAACTGCTTCGAATATCTGATAAAGATAAATCTTGGAGGGAAAAACTCTGGAAAAATGGTATTGTCAAAACATCTCGCATGGCTCCTCGGCAATGTCCTCAATATGTGGGAACTGAAGAGGATCCATCATGCATTATTTGCCAGCAATATCTATATCTTTCTGCTGTTGTGTGCAGTTGCAGGCCATCTTCTTTTGTATGCCTGGAGCACTGGGAACATCTTTGTGAGTGTAAAACTGTAAAACTACGTCTTCTATATCGTCACTCACTTGCAGAATTGTATGACTTGGTACTTTCTTTGGACAATTATACTTCTGAGGAGAAAGCATTTGGTAGGAGTATAAGAAAGAATTCTTCATGTCCGGCTACTTTGACAAAAAAGGTAAATGGTGGTTCCGTTAGTTTCTCACAGCTTGCTGCACAATGGCTTCTGCGATCTAGTGAGATTCTTCAGAATCCTTATTCAAGTGATGCTTTTGTTTCTGCACTAAGGGAAGCTGAACAGTTTCTATGGGCTGGTCCTGAGATGAATTCTGTTCGCGATATGGTGAAGAATTTGATCGAAGCTCAGAAGTGGGCAGCAGGGATAAGAGATTGTTTAAGAATAATTGAAGCCTGGTTGTGTGGTCAGGAATCTGACATTGAGAAAGTTCACTTAGAATTTGTTGATGAGCTCCTAACATTTAATTCTCCACCAAGCAATGAGCCTGCTTATCATAAGTTGAAGGAATATACAGAAGGGGCCATATTCTTAAGTCAGGAGATTAATATTGCTTTGTCAAAGTGTTCAAAGATCTCTGAGTTGGAATCTCTACATTCTAGAGCTTGTGCCTCTCCAATCTACGTGAAAGATGTGAAGTATTTGGAAAGGAAAATTTCTTCTACTAAGGCATGGCAGCATAGAGCTAGAAGCTGCATCTCAGTGAAACATCCTGCTGCAGTAGAGCTTGATGTTCTTTGCAAGTTGAAGTCGGAGATTATGGAGCTTCAAGTACAACTTCCAGAAATAGAAGTGATTCAGAATATATTAAGTCAAGCGGAATCTTGTAGTTCAAAATGTAGTGAGATATTACAAGGTCCCATGAATCTAAAGAATGTCGATTTGCTGCTTAAGGAATGGGACAGCTTTATGGTTGATGTACCAGAAGTGAAGCTTCTGAGGCAATATTATAAGGATGGTGTTTCATGGGTTTCCAACTTTAACCGTGTATTAGGGACAACACATGAACGCCATGATCAACATAAAGTTATTGATGAATTGAAGGGTATTTTAGATGATGGTTTATCTTTAAAAATTCAAGTTGATGAGTTGCCATTAGTTGAGACTGAGCTGCAGAAAGCTCTTTGTCGGGAAAAGGCTCAAAAGGCACATAAATCTAAGATGCCTCTGGAATTTGTTGAAGAAGTGATGAAGGAGGCCAGACTGCTGCAAATTGAGGGAGAGAAATTATTTGTTGGTTTATCCGGTGTGCTTGCTGTTGCCATACCTTGGGAGGAAAGGGCTAAAGAGATTCTTTCACATAAGGCTTCTTTCTCTGACTTTGAGGCCATGATCAGGACGTCAGAAACCATTTTTATGATTCTTCCTTCCCTTAATGATGTGAAGGAAGCACTATTGGAAGCTAATTCATGGTTAATGAATTCAAAACCATTCTTGGTTTCTTCTAGTTGTCCATCAGATTCTCTACGGAAAGTTGAGGACCTTCAGATGTTGGTTTCTCATTCGAAGCTTCTTAAAATATCTTTTGAAGAAATAAGGATACTTGAAACAGTTTTGCATAACTGCAAAGAATGGGAGTCTGAGGCATGTTCTGTATTGGAAGATGCCTGTCATATTTTTGAATTGGATGACATTGTTCATGGAATAAGCAGTGGCCTAATGTCCAGAGTTGAAGGTTTGATTGCCAGAATGCAGTCTACCACAAGATCTGCTTTATTGCTTGGTTTTGAGTTCGATGAGATTCCAAGACTTAAAGCAACTTGTTCTACACTGCTGTGGTGCAAAAAGATTCTTTCCTTCTGCAATCTTTCTCCTTCTTTAGAGGATGTTTTAGAGGCTACAGAACACCTTCCTCATTTGTGTGGTTCTGGGGCCCTATTGAATCTACTGATTGGTGGAGTCAAATGGCTTAGGCAAGCCTTGGAGGGAATTTCTGGACCACGCAATTCTGGAAGAAAGTCAAGTGAAGTTGAAGATATTATTAGAGATTACCAGACTATTAATATTCCTTTTGCAGCAATAATATACCAACTTGAAGAAGCCATAGGAAAACATAGGTTGTGGCAAGAACAGGCGCATCAATTCCTTAGCCTTTGTTCTGGGGAACGGTCTTGGTTATTGATGTTCAAACTCAAGGAACTAGGTGATAATGTTGCTTTCGGCTGCACGGAACTGGATTTGATTTTATCTGAAGTTGAGAAGGTGGAGGATTGGAAGAAACACTGCATGAATTTTATAGGAACTTTAGTCCAAAATGAGAATTCACTTCTTGCTGCTCTGCAGAAGATGAAACAGAGTCTAGATAGATCATTGTCCATATATGGGAAGTTGAATGACTGCAAGGAAGAATGTTTATGCTTTTACTGCTTTACTAATTCTGAAGATCAGGAATTTCTTACTTGCTCCACTTGTAGAAACTGCTATCATATACTGTGTCTTGGACCATTGGTGGACAATAGCCATGAAAATTATACATGTCGTTCCTGTAAAATATTAGAGGGTGAATCCAATTATAAGAAGGGAACTCTCCTCTTGGGGTTTGGGGAGAAGCGTGCTGAACTGAAAGTTCTTCGTGAACTTCTTTCTGATGCTAAAAATTTGTGTGTAAGAATTGATGAGACAGATGCTCTCAACGAACTTGTTGAGCAAGCACTACTATGCAGATCTTGCTTGAGAGAAGTGGTGAACTTTACATCAGCTAATGTAGACAGTGATCTTAGTATCATCTCTGAAAGATTGACCATAGCTATAAAGGCTTGTGAAGTTTCTGGTGTCTGTGATCATCAAGATTTACATGACCTTGAGTTGGCATTAGCAAGACACCTTTGGAAAGTTCAAGTCAATGGAATGCTAAATAGTTTACAAAATCCTTCTATCCAAGAGATACAGAAGCATCTGAAAGAGGGACTATCTCTGGAAATACCACCTGAAGATCATTACATGCTGCAACTTGCAAAAATGAATTGCTTGTATTTGCAGTGGGCCGAACTAGACAAGAAGGTTGCAGTTGATTCTAGGGCGCCCAGCCTAGATAAAGTTTTTGAACTCATTGAAGAAGGTGAAAACTTGCCTGTTAAGGTGGATGAGAATCTCAGGATTTTAAGGGCTCGAAGTATGCTTTATTGCATTTGTCGAAAACCGTTTGATCCAGGGAGGATGATTGCATGTAATCAGTGTGGTGAGTGGTATCACTTTGATTGCATGAAATTACCATACAGTCAAGAGTTCTACATTTGTCCTGCATGTAACCCCTCTACAGCAGGAATGCCAACATCTCTGGATAATGAGAGATTAATTAGCCGTAAACTGGAGGAACCTAAAACACCATCTCCAAGGCATACGTATCCAAGAAAGAAACAGAAGAGAGATGAGGCAATGTGTGGAAGCGATGATCAAATTCAAATTAATAATTTTAGGAATCTGAGTGGGATAGAATGTCTTAGATGGAAAAATCGAAAGCCTTTCAGAAGAGCAGCTAAGAAACGTGTTGACCTTCGGAGTCTTTCTTCATTTCTATGTATACACAACAACACTAACTGA 5592 0.4033 MSRKTTKTSVCFPGHPVLSYEFWVIPMGKGRPRAVEKGVAGQSLSVSSSGSLNIPSAPVYFPTEDEFTDPLEYIYKIRPEAEPYGICKIVPPKSWKPPFALDLDFFTFPTKTQEIHKLQARPAACDSKTFELEYSRFLEDHCGKKSRKKILFEGEELDLCILFNSVKRFGGYDKVVKEKKWGDVSRFVRPGRKMTDCAKHVLSQLYCEHLYDYENFYNQLNQGTGKKGMLEGEKSEHCVRSSGSKRMRSSDCLKVKDCKVQEEEHDQICEQCRSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPPGNWYCFNCLNSDRDSFGFVPGKQYNLEAFRRVADRSRRRWFGPGPVSRVQMEKKFWDIVEGSVGEVEVMYGSDLDTSVFGSGFPRSTVQKPESIDPKLWDEYSSNPWNLNNLPKLKGSMLQAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSINYLHWGEPKCWYSVPGSEAGAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSIIQEPGNFVITFPRSYHGGFNLGLIALSGLNCAEAVNFAPADWLPYGAFGADLYQRYHKAAVLSHEELLCVVAQYSDIDSRASPYLKKELLRISDKDKSWREKLWKNGIVKTSRMAPRQCPQYVGTEEDPSCIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKTVKLRLLYRHSLAELYDLVLSLDNYTSEEKAFGRSIRKNSSCPATLTKKVNGGSVSFSQLAAQWLLRSSEILQNPYSSDAFVSALREAEQFLWAGPEMNSVRDMVKNLIEAQKWAAGIRDCLRIIEAWLCGQESDIEKVHLEFVDELLTFNSPPSNEPAYHKLKEYTEGAIFLSQEINIALSKCSKISELESLHSRACASPIYVKDVKYLERKISSTKAWQHRARSCISVKHPAAVELDVLCKLKSEIMELQVQLPEIEVIQNILSQAESCSSKCSEILQGPMNLKNVDLLLKEWDSFMVDVPEVKLLRQYYKDGVSWVSNFNRVLGTTHERHDQHKVIDELKGILDDGLSLKIQVDELPLVETELQKALCREKAQKAHKSKMPLEFVEEVMKEARLLQIEGEKLFVGLSGVLAVAIPWEERAKEILSHKASFSDFEAMIRTSETIFMILPSLNDVKEALLEANSWLMNSKPFLVSSSCPSDSLRKVEDLQMLVSHSKLLKISFEEIRILETVLHNCKEWESEACSVLEDACHIFELDDIVHGISSGLMSRVEGLIARMQSTTRSALLLGFEFDEIPRLKATCSTLLWCKKILSFCNLSPSLEDVLEATEHLPHLCGSGALLNLLIGGVKWLRQALEGISGPRNSGRKSSEVEDIIRDYQTINIPFAAIIYQLEEAIGKHRLWQEQAHQFLSLCSGERSWLLMFKLKELGDNVAFGCTELDLILSEVEKVEDWKKHCMNFIGTLVQNENSLLAALQKMKQSLDRSLSIYGKLNDCKEECLCFYCFTNSEDQEFLTCSTCRNCYHILCLGPLVDNSHENYTCRSCKILEGESNYKKGTLLLGFGEKRAELKVLRELLSDAKNLCVRIDETDALNELVEQALLCRSCLREVVNFTSANVDSDLSIISERLTIAIKACEVSGVCDHQDLHDLELALARHLWKVQVNGMLNSLQNPSIQEIQKHLKEGLSLEIPPEDHYMLQLAKMNCLYLQWAELDKKVAVDSRAPSLDKVFELIEEGENLPVKVDENLRILRARSMLYCICRKPFDPGRMIACNQCGEWYHFDCMKLPYSQEFYICPACNPSTAGMPTSLDNERLISRKLEEPKTPSPRHTYPRKKQKRDEAMCGSDDQIQINNFRNLSGIECLRWKNRKPFRRAAKKRVDLRSLSSFLCIHNNTN 1863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1039 1863 Gene3D Cupin 39 151 - -
Lele55g1039 1863 FunFam Transcription factor jumonji (JmjC) domain-containing protein 43 147 - -
Lele55g1039 1863 ProSiteProfiles Zinc finger PHD-type profile. 1467 1516 IPR019787 -
Lele55g1039 1863 ProSiteProfiles ARID domain profile. 124 218 IPR001606 GO:0003677
Lele55g1039 1863 Pfam C5HC2 zinc finger 655 706 IPR004198 -
Lele55g1039 1863 Gene3D Cupin 293 584 - -
Lele55g1039 1863 SUPERFAMILY ARID-like 107 223 IPR036431 GO:0003677
Lele55g1039 1863 SUPERFAMILY FYVE/PHD zinc finger 1722 1770 IPR011011 -
Lele55g1039 1863 CDD ARID 126 214 - -
Lele55g1039 1863 SMART PHD_3 1725 1767 IPR001965 -
Lele55g1039 1863 SMART PHD_3 1469 1514 IPR001965 -
Lele55g1039 1863 SMART PHD_3 268 314 IPR001965 -
Lele55g1039 1863 Pfam jmjN domain 58 91 IPR003349 -
Lele55g1039 1863 SMART cupin_9 406 578 IPR003347 -
Lele55g1039 1863 ProSiteProfiles JmjC domain profile. 406 578 IPR003347 -
Lele55g1039 1863 SMART bright_3 125 219 IPR001606 GO:0003677
Lele55g1039 1863 Pfam PHD-finger 1725 1768 IPR019787 -
Lele55g1039 1863 Pfam PHD-finger 268 315 IPR019787 -
Lele55g1039 1863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1414 1518 IPR013083 -
Lele55g1039 1863 SMART JmjN_1 56 97 IPR003349 -
Lele55g1039 1863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1711 1768 IPR013083 -
Lele55g1039 1863 Pfam JmjC domain, hydroxylase 439 561 IPR003347 -
Lele55g1039 1863 ProSiteProfiles JmjN domain profile. 57 98 IPR003349 -
Lele55g1039 1863 MobiDBLite consensus disorder prediction 1785 1807 - -
Lele55g1039 1863 ProSitePatterns Zinc finger PHD-type signature. 269 313 IPR019786 -
Lele55g1039 1863 SUPERFAMILY Clavaminate synthase-like 403 595 - -
Lele55g1039 1863 Pfam PLU-1-like protein 972 1222 IPR013637 -
Lele55g1039 1863 Pfam PLU-1-like protein 757 966 IPR013637 -
Lele55g1039 1863 SUPERFAMILY FYVE/PHD zinc finger 1454 1515 IPR011011 -
Lele55g1039 1863 SMART ARID_2 121 214 - -
Lele55g1039 1863 ProSitePatterns Zinc finger PHD-type signature. 1726 1766 IPR019786 -
Lele55g1039 1863 CDD PHD_RSF1 269 313 - -
Lele55g1039 1863 Pfam ARID/BRIGHT DNA binding domain 138 214 IPR001606 GO:0003677
Lele55g1039 1863 ProSiteProfiles Zinc finger PHD-type profile. 266 316 IPR019787 -
Lele55g1039 1863 PANTHER LYSINE-SPECIFIC DEMETHYLASE 53 1052 - -
Lele55g1039 1863 SUPERFAMILY FYVE/PHD zinc finger 262 316 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1039 Lele-ChrLele55 9772824 9806273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1039 321 713 JUMONJI Transcription Factor Family AT4G20400 40.238 6.83e-90 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele55g1039 PLU-1 6.9e-20 No_clan