Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1038 ATGGATGGGAGAGAAGCTATGGCATTCTCTGGTGGCTCAGCTCCATATTACATGCATAGGGGAAATGTTTCTGGGTCTGGCTCTGGAACACAAGCCCAGGGGTTCCAACAATCACCTCCTGGGTTTAGACATTTGTCAAACGTTGGATTTCAAGCTCAACCAAATGTCCGAGGTGGTTCTGTGGGTTCCACATTTCCAGTAGAGCCTTCTCGTAGCAATTTTAGTCAAGGCCCTAACATAATAAGTTCCTCCCCCGGAGTACCTTCTTCAGGTGAACCCTTGAAAAAGAAGAGAGGAAGGCCTCGTAAATATGGTCCTGATGGCCCTGTTTCTTTGGGACTGTCTCCCATGTCTGCAACTGCTAATTCTACCCCAGGTTCAGGCACATCTTCCCAGAAACGGAATAGAGGACGTCCACCTGGTTCTGGCAGGAAGCAGCAACTAGCGGCTCTAGAAATCCTTGAAGCCAACATGCTTTTCATTCATGAGGCATACCTGCATAAAGAAATCAATGGAGAGAAAAATAATTTAGTGAATAAAGTCTGTTTCTTTATTTCGGTTCTGAATATTGATATGCTGGACATTGTAGCAAAGTTATTGTCTTTATCACAGCAGAGACCAAGGGCTCTGTGCATCATGTCAGGCACTGGCACAGTTGCTTCTGTCACTCTACGCCAACCTGCCTCAACAAACATCAGTCTCACTTATGAGGGCCGATTTCAAATTTTATGCTTGTCTGGCTCATACTTGGTTGCTGAAGATGGTGGGCCTCGTGATAGAACAGGAGGTTTGAGTGTTTCTCTTTCTAGTCCTGATGGTCAAGTTATCGGTGGTGGTGTTGCTGTGCTTATCGCTGCAAGCCCGGTTCAGGTGGTGGTGTGCAGTTTTGTACATGGAAATGCTAAGATGAAGAAACAAGTAACCTCTCCCAAGAGTAAGAATTCTGAGGCTCAGGCTCAGGCTCAGGCTCGACATGATGGTAACAAGTCAAATAGCCCTATTACAATAGCCACGTTTCCTAATGTAGATCTGAGAAACGCACTCGTGCATACTCATACCGGTATCGACTTGACTCGGGGCTGA 1083 0.4626 MDGREAMAFSGGSAPYYMHRGNVSGSGSGTQAQGFQQSPPGFRHLSNVGFQAQPNVRGGSVGSTFPVEPSRSNFSQGPNIISSSPGVPSSGEPLKKKRGRPRKYGPDGPVSLGLSPMSATANSTPGSGTSSQKRNRGRPPGSGRKQQLAALEILEANMLFIHEAYLHKEINGEKNNLVNKVCFFISVLNIDMLDIVAKLLSLSQQRPRALCIMSGTGTVASVTLRQPASTNISLTYEGRFQILCLSGSYLVAEDGGPRDRTGGLSVSLSSPDGQVIGGGVAVLIAASPVQVVVCSFVHGNAKMKKQVTSPKSKNSEAQAQAQARHDGNKSNSPITIATFPNVDLRNALVHTHTGIDLTRG 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1038 360 ProSiteProfiles PPC domain profile profile. 178 320 IPR005175 -
Lele55g1038 360 MobiDBLite consensus disorder prediction 23 89 - -
Lele55g1038 360 MobiDBLite consensus disorder prediction 1 145 - -
Lele55g1038 360 Pfam Plants and Prokaryotes Conserved (PCC) domain 194 297 IPR005175 -
Lele55g1038 360 MobiDBLite consensus disorder prediction 305 334 - -
Lele55g1038 360 SUPERFAMILY AF0104/ALDC/Ptd012-like 194 300 - -
Lele55g1038 360 Gene3D - 193 317 - -
Lele55g1038 360 MobiDBLite consensus disorder prediction 115 137 - -
Lele55g1038 360 CDD DUF296 194 296 IPR005175 -
Lele55g1038 360 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 65 321 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1038 Lele-ChrLele55 9763975 9768172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1038 1 360 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 43.137 3.09e-74 233