Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1034 ATGGGATCCATTTCGACGACGACCAAGTTTACGGAGAACAATTACTGGAGATACGTCACCAATTTCCACTTCCAGTGCTGCGGCAACCTGTCGCCGGATCCACACTATCCGTCGATCATAAGGTTTCCAAGAGGCTCCTCGCCGGAAGAGGCGACGGAGGCCAAAGCAGTTTTCATTGTCGCCGGAATGACATGCGCCGCCTGTGCTGGATCCGTGGAGAAGGCCGTCAAACGCCTCCCTGGAATTCGCGACGCCGCCGTCGATGTCTTGAACGATAAAGCGCTGGTTCGGTACTTTCCGGCCATGGTTACGGAGGAAAGAATAAGAGAGGCCATTGAAGACGCCGGATTTGAAGCCAAGTTCATTGAAGAAGAATCAAACGAAAAGCCTTCTCAAATCTGCCGAATACACATAAACGGTATGACTTGTACTTCTTGTTCCTCCACTGTTGAATCCCTTCTTCAAGCCATTCCTGGAGTTCAGAAAGCACAAGTGGCCTTAGCAACCGAAGAAGCTCAAGTTCGTTATGACCCAAAGATCGTCACCTTCAATAATCATCTAAAGGAAGCCATTGAAGATGCAGGATTTGAAGCCATACTTATAAGCACAGGTGAACACATAAGCAAAATAGAATTGAAAATTGAAGGCCCTAAAAAAATTGATCATCATCAATCTTTGATGAGGGCGATTGAAAAGTCCCTTCAGTCACTTCCAGGAGTTGAAAACACACACATTAATCAAGAAATGAACAAGGTTTCCATTTCTTATAAACCCTATATGACAGGGCCCAGAACTTTCATTGAAGTCATAGAAGAATCTTCAAGTTTCAGGGCCATGATATTTCCTGATGGAGGAGGAGGAGGAGGAGGAGGAAGGGAGACTCATAATAGACAGGAGGAAATCAATAAATACTTCAAGTTATTCATATGGAGTTTGGCTTTCTCCCTTCCTGTATTTCTGACATCCATGGTCCTCATGCATATTCCTAGAATTAACCATCTTCTAGATATGAAAGTGGTGAACAACCTGAAAATTGGACTGCTCATCAGGTGGGAATTTTCGACCCCGGTACAGTTCTTCATTGGCAGGAGATTCTACATTGGGGCTTATAAATCTTTGCGCAATGGTTCAGCTAACATGGATGTATTAATCGCCTTGGGAACAAATGCAGCTTACTTCTATTCTGTTTATGTTGTGATCAGAGCGTCTTTAGGTAGAGACTTCATGGGAAGTGATTTTTTTGAGACTAGCTCTATGCTTATCTCATTTATTCTTTTAGGCAAGTACCTGGAAGTGTTAGCAAAGGGAAAGACATCACAAGCCATTGCCAAACTTATGGAATTGACTCCTGACACAGCAATCTTGTTAACTGTAAATGATGAAGGCAATAATGTAACAAGTGAACAGAAAATAGATAGCAGGTTGATACAAAAGGATGATGTGATAAAAATAGTACCTGGTGCCAAAGTAGCATCGGATGGTTTTGTGATTTGGGGAAAAAGCCATGTAAATGAGAGCATGATAACAGGAGAAGCCAGGCCTGTGGCAAAGAAGAAGGGTGATATGGTGATTGGAGGCACTGTAAATGGCAATGGAGTTTTGCATGTGAAGGTGACAAGAGTTGGATCAGAGAGTGCCCTCTCGCAGATTGTTCGACTTGTTGAGTCAGCTCAGATGTCTAAAGCTCCTGTTCAGAAGCTTGCAGACCGTATTTCCAAATACTTTGTGCCACTGGTTATAATGCTTTCTCTTGCAACTTGGATGTCCTGGTTCGTGGCTGGACAATTACATGTATACCCAGAATCTTGGATTCCGTGCTCCATGAACAGCTTTGAGCTTGCACTTCAGTTTGGGATCTCTGTGATGGTCATAGCCTGTCCTTGTGCTTTAGGCCTAGCCACTCCTACAGCTGTCATGGTTGGCACTGGAGTTGGCGCGACTCAGGGCGTGTTGATCAAAGGTGGCCAAGCATTAGAAAAGGCACATAAGGTGAATTGCATTGTCTTCGATAAGACGGGAACTTTAACAGTTGGGAAACCAGTCGTTGTAAGCACAAAACTCTTCAAGAAGATAACACTTCAAGATTTCTACAAATTTGTTCTTGCAACTGAGGTGAACAGTGAACACCCAATAGCCAAGGCCCTTGTTGAGCATGCTGATAAAGCCATAGAAGATGATGAAAAGAACCATGCATGGCCAGAAGCATGTGATTTTGTTTCCATTTCAGGCCATGGAGTGAAGGCCAATGTTCGAGACAAGGAAATAATAGTTGGGAATAAGAAGTTGATGCAGGATCATAACATAGTCATTCCAGTGGATGCTGAAGAAACACTAGCTGAGGCTGCAAGGTTGGCACAAACTGGAATTCTAGTGTCCATAGATAGAGAAATTGCAGGAGTCCTAGCAATATCTGATGCGTTGAAACCAAGCGCCAAAGAAGTCATTTCCATCCTTAACTCCATGAAAATTAAAAGCGTCCTGGCGACAGGAGATAACTGGGGAACTGCAAATTCCATCGCCAGGCAAGTTGGGATTGAAACTGTCATAGCTGAAGCTCAGCCTGAGGTTAAAGCAGACAAAGTAAAAGATTTGCAGTCTTCTGGCTACACTGTGACAATGGTGGGAGATGGCATCAATGATTCACCAGCACTTGTGGCGGCTGATGTGGGAATGGCAATTGGTGCTGGAACAGATATTGCTATTGAGGCAGCTGACATAGTGCTCACGAAGAGCAACTTAGAAGACATAATAATTGCCATTGATCTTGCCAAGAAAACTTTCTCTAGGATTCGTCTAAACTACATTTGGGCTCTGGGATACAATCTTCTGGCAATTCCAATAGCTGCTGGAATCCTTTACCCATCTACCGAATTCCGGTTACCGCCATGGATTGCTGGAGCTGCAATGACAACATCTTCCCTCAGTGTTGTCTGCTCCTCCCTCTTGTTGAAGAACTACAGGAGACCCCAAAAGCTGAATAACCTGGACATGATTGACATTAAGATTGAATAA 3012 0.4389 MGSISTTTKFTENNYWRYVTNFHFQCCGNLSPDPHYPSIIRFPRGSSPEEATEAKAVFIVAGMTCAACAGSVEKAVKRLPGIRDAAVDVLNDKALVRYFPAMVTEERIREAIEDAGFEAKFIEEESNEKPSQICRIHINGMTCTSCSSTVESLLQAIPGVQKAQVALATEEAQVRYDPKIVTFNNHLKEAIEDAGFEAILISTGEHISKIELKIEGPKKIDHHQSLMRAIEKSLQSLPGVENTHINQEMNKVSISYKPYMTGPRTFIEVIEESSSFRAMIFPDGGGGGGGGRETHNRQEEINKYFKLFIWSLAFSLPVFLTSMVLMHIPRINHLLDMKVVNNLKIGLLIRWEFSTPVQFFIGRRFYIGAYKSLRNGSANMDVLIALGTNAAYFYSVYVVIRASLGRDFMGSDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMELTPDTAILLTVNDEGNNVTSEQKIDSRLIQKDDVIKIVPGAKVASDGFVIWGKSHVNESMITGEARPVAKKKGDMVIGGTVNGNGVLHVKVTRVGSESALSQIVRLVESAQMSKAPVQKLADRISKYFVPLVIMLSLATWMSWFVAGQLHVYPESWIPCSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALEKAHKVNCIVFDKTGTLTVGKPVVVSTKLFKKITLQDFYKFVLATEVNSEHPIAKALVEHADKAIEDDEKNHAWPEACDFVSISGHGVKANVRDKEIIVGNKKLMQDHNIVIPVDAEETLAEAARLAQTGILVSIDREIAGVLAISDALKPSAKEVISILNSMKIKSVLATGDNWGTANSIARQVGIETVIAEAQPEVKADKVKDLQSSGYTVTMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLTKSNLEDIIIAIDLAKKTFSRIRLNYIWALGYNLLAIPIAAGILYPSTEFRLPPWIAGAAMTTSSLSVVCSSLLLKNYRRPQKLNNLDMIDIKIE 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1034 1003 FunFam Copper-transporting ATPase HMA5 53 124 - -
Lele55g1034 1003 SUPERFAMILY Calcium ATPase, transduction domain A 468 554 IPR008250 -
Lele55g1034 1003 TIGRFAM TIGR00003: copper ion binding protein 57 119 IPR006122 GO:0005507
Lele55g1034 1003 TIGRFAM TIGR00003: copper ion binding protein 136 198 IPR006122 GO:0005507
Lele55g1034 1003 FunFam Copper-transporting ATPase HMA5 131 203 - -
Lele55g1034 1003 SUPERFAMILY HMA, heavy metal-associated domain 227 272 IPR036163 GO:0046872
Lele55g1034 1003 FunFam Copper-transporting ATPase 1, putative 435 558 - -
Lele55g1034 1003 ProSitePatterns E1-E2 ATPases phosphorylation site. 670 676 IPR018303 -
Lele55g1034 1003 Gene3D - 212 274 - -
Lele55g1034 1003 SUPERFAMILY HMA, heavy metal-associated domain 53 125 IPR036163 GO:0046872
Lele55g1034 1003 Gene3D - 133 202 - -
Lele55g1034 1003 PRINTS Copper-transporting ATPase signature 437 455 - -
Lele55g1034 1003 PRINTS Copper-transporting ATPase signature 651 666 - -
Lele55g1034 1003 PRINTS Copper-transporting ATPase signature 947 961 - -
Lele55g1034 1003 PRINTS Copper-transporting ATPase signature 365 384 - -
Lele55g1034 1003 PRINTS Copper-transporting ATPase signature 851 868 - -
Lele55g1034 1003 PRINTS Copper-transporting ATPase signature 417 436 - -
Lele55g1034 1003 ProSiteProfiles Heavy-metal-associated domain profile. 133 200 IPR006121 GO:0046872
Lele55g1034 1003 CDD HMA 57 120 IPR006121 GO:0046872
Lele55g1034 1003 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 420 953 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele55g1034 1003 Gene3D - 435 558 - -
Lele55g1034 1003 ProSitePatterns Heavy-metal-associated domain. 60 89 IPR017969 GO:0046872
Lele55g1034 1003 CDD P-type_ATPase_Cu-like 308 969 - -
Lele55g1034 1003 SUPERFAMILY HMA, heavy metal-associated domain 131 205 IPR036163 GO:0046872
Lele55g1034 1003 FunFam Probable copper-transporting ATPase HMA5 784 931 - -
Lele55g1034 1003 Gene3D - 635 931 IPR023214 -
Lele55g1034 1003 CDD HMA 138 198 IPR006121 GO:0046872
Lele55g1034 1003 Gene3D - 755 805 IPR023299 GO:0000166
Lele55g1034 1003 Gene3D - 675 754 IPR023299 GO:0000166
Lele55g1034 1003 Gene3D - 49 121 - -
Lele55g1034 1003 Pfam Heavy-metal-associated domain 136 197 IPR006121 GO:0046872
Lele55g1034 1003 Pfam Heavy-metal-associated domain 57 118 IPR006121 GO:0046872
Lele55g1034 1003 SUPERFAMILY Calcium ATPase, transmembrane domain M 416 659 IPR023298 -
Lele55g1034 1003 ProSiteProfiles Heavy-metal-associated domain profile. 55 121 IPR006121 GO:0046872
Lele55g1034 1003 SFLD Haloacid Dehalogenase 650 925 - -
Lele55g1034 1003 ProSitePatterns Heavy-metal-associated domain. 138 167 IPR017969 GO:0046872
Lele55g1034 1003 CDD HMA 224 272 IPR006121 GO:0046872
Lele55g1034 1003 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 27 1000 - -
Lele55g1034 1003 PRINTS P-type cation-transporting ATPase superfamily signature 799 810 - -
Lele55g1034 1003 PRINTS P-type cation-transporting ATPase superfamily signature 504 518 - -
Lele55g1034 1003 PRINTS P-type cation-transporting ATPase superfamily signature 821 831 - -
Lele55g1034 1003 PRINTS P-type cation-transporting ATPase superfamily signature 874 893 - -
Lele55g1034 1003 PRINTS P-type cation-transporting ATPase superfamily signature 897 909 - -
Lele55g1034 1003 PRINTS P-type cation-transporting ATPase superfamily signature 668 682 - -
Lele55g1034 1003 SUPERFAMILY HAD-like 667 980 IPR036412 -
Lele55g1034 1003 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 380 983 IPR027256 GO:0006812|GO:0016020|GO:0019829
Lele55g1034 1003 Pfam E1-E2 ATPase 462 646 - -
Lele55g1034 1003 Pfam haloacid dehalogenase-like hydrolase 664 888 - -
Lele55g1034 1003 PRINTS Copper-transporting ATPase 1 signature 81 104 - -
Lele55g1034 1003 PRINTS Copper-transporting ATPase 1 signature 110 130 - -
Lele55g1034 1003 PRINTS Copper-transporting ATPase 1 signature 55 80 - -
Lele55g1034 1003 PRINTS Copper-transporting ATPase 1 signature 156 177 - -
Lele55g1034 1003 SFLD p-type atpase 650 925 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1034 Lele-ChrLele55 9214164 9227511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1034 54 1003 Primary Pumps ATPases AT1G63440 70.366 0.0 1388