Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1027 ATGGGTCACCATACTTGCTGCAATCAACAGAAGGTTAAAAGAGGGCTTTGGTCTCCAGAAGAAGACGAGAAACTCATTCGATACATTTCCACTCATGGCTATGGCTGCTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTAGATTGAGATGGATTAATTACTTGAGGCCTGATATAAGAAGAGGCAGATTTAGTCCTGAGGAAGAAAAGCTAATTATAAGCCTTCATGGAGTCGTAGGCAACAGATGGGCTCACATAGCCAGCCACTTGCCCGGCAGAACTGACAATGAAATAAAGAATTATTGGAATTCTTGGATCAAAAAGAAAATAAGAAAACCTTCTTCTTCTTCAACCACCACTACACAACCTGTGAATGATCATCATCATCATCTTCCCCAATTCAGTCATAACAATATTAATAATCCCAATAATCAATTTCACTCTATCACCACCCAAGATCATAACCTAATCACATCAAAACCACCACTTCATGAAACCTTATTATTCTCTCCCACCTGCCCCTTGTTCATGTTCGACACCAGTACTACTTCACTACATCATGGGATTACAACAACCTCAGACATCGTCCTCAACAACAACGTCAACAACAACAGCAATGGCGCAGTAGCAGCAGCAGAAGTTTTCCAAGATGGTACTACTGTAAGTTTGATGAGCTCTGATGATAGTTGGAATTTGAGCCAACATCATCATCTTCTTCTTCCTCCTTCTTCTGCAACAACAACTTTTACAGGCATGGACAATAATGCTAGTTTGCCAACTTTCCTAGAAAACATTGTTAATAATAATAATCCTGATGCGCAAGTAGAGGCATGTTGTATAGAGGAAGAAGGAGATCATATAGCAGCAATGGAGCGTTTGAGGAGGCAAGATGATGATGATCAGTTGAATAATATTGATTGGGTGGAGACGACAGGCCAACAACAATGTCCCAACTTCTTGTTCTGGGACAACTTTAGTGGGGATGAAGAAATTATGGCGCCAAGTTCATTATCAAATAATGTGCTTTCTTCTTCTTCTTCGTTTCCTTCATCCTGA 1074 0.4078 MGHHTCCNQQKVKRGLWSPEEDEKLIRYISTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFSPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSSSSTTTTQPVNDHHHHLPQFSHNNINNPNNQFHSITTQDHNLITSKPPLHETLLFSPTCPLFMFDTSTTSLHHGITTTSDIVLNNNVNNNSNGAVAAAEVFQDGTTVSLMSSDDSWNLSQHHHLLLPPSSATTTFTGMDNNASLPTFLENIVNNNNPDAQVEACCIEEEGDHIAAMERLRRQDDDDQLNNIDWVETTGQQQCPNFLFWDNFSGDEEIMAPSSLSNNVLSSSSSFPSS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1027 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele55g1027 357 FunFam Transcription factor MYB26 68 140 - -
Lele55g1027 357 CDD SANT 17 61 IPR001005 -
Lele55g1027 357 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele55g1027 357 Gene3D - 69 139 - -
Lele55g1027 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele55g1027 357 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lele55g1027 357 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele55g1027 357 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele55g1027 357 SMART sant 13 63 IPR001005 -
Lele55g1027 357 SMART sant 66 114 IPR001005 -
Lele55g1027 357 Gene3D - 5 66 - -
Lele55g1027 357 MobiDBLite consensus disorder prediction 118 154 - -
Lele55g1027 357 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele55g1027 357 CDD SANT 69 112 IPR001005 -
Lele55g1027 357 FunFam MYB transcription factor 6 66 - -
Lele55g1027 357 PANTHER MYB DOMAIN PROTEIN 55 1 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1027 Lele-ChrLele55 8658946 8660890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1027 1 331 MYB Transcription Factor Family AT1G63910 48.098 6.79e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele55g1027 Myb_DNA-binding 2.5e-15 CL0123