Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1017 ATGGGAAATTGCAGCGGCGCAGCCTCCGGGGATAGCCAACCTGGCAACTCCGACGCCACCCATTCCGGCCCTCCTCACCAACGCAACAATGGCATCACCGTCCTTCCTCCTGATTCCAACCCCTCTCGTCCTCATCCACCGTCTAAACCAGTTCTCTCTTCTTCCGTCGGCCGCGTCCTTGGTCGACCCATGGAGGACGTCCGTTCCACCTATATCTTCGGCCGCGAACTCGGTCGTGGTCAATTTGGGGTCACCTACCTAGTCACTCACAAAGTTACTAAAGAACAATTCGCCTGCAAATCTATTGCTACCCGCAAACTGGTTAACCGCGACGATTTGGAGGACATTCGCCGCGAGGTCCAGATCATGCACCACCTCACTGGTCATCGGAACATTGTGGAGCTTAAGGGAGCTTACGAGGATCGATACTCTGTTAATTTGATCATGGAGCTTTGCGCTGGTGGGGAGCTGTTTGATAGGATCATAGCTAAGGGGCACTACTCGGAGCGAGCTGCATCGGACTTATGTCGGCAGATCGTGACGGTAGTGCATGATTGTCACACCATGGGAGTTACGCATAGAGATTTGAAGCCTGAGAATTTCTTATTCCTCAGTAAGGAGGAAAGTTCACCTCTTAAGGCAACTGATTTCGGCCTCTCCGTATTCTTCAAGCCAGGAGATGTATTTAAAGATCTTGTTGGGAGTGCATATTATGTTGCTCCTGAGGTACTGCGTAGAAGCTACGGACCTGAAGCTGATATTTGGAGTGCCGGTGTTATATTATACATTCTTCTCAGCGGTGTCCCACCCTTCTGGGCAGAAAATGAACAGGGTATCTTCAATTCAATTCTTCGTGGGCATATTGACTTCGTATCAGATCCATGGCCTTCGATTTCAAGTAGTGCCAAAGACCTCATCAAAAAGATGCTTCAAGCTAACCCAAAAGATAGGCTTTCAGCAGTTGATGTCCTTAATCATGCTTGGATGAGAGAAGATGGGGATGCATCTGATAAGCCGCTTGATATTGCTGTTCTAAGCAGAATGAAACAATTCCAGGCAATGAACAAGCTAAAAAAAGTAGCTTTGAAGGTCATCGCAGAAAATCTATCTGAAGAAGAAATCATTGGCTTAAAGGAAATGTTCAAATCCATGGACACAGATAACAGTGGAACAATCACTTTTGATGAGTTAAAAGCTGGTCTCCACAAACTGGGTAGTAAGCTTTCTGAGTCTGAAATAAGGCAGTTGATGGAAGCGGCTGATGTAGATGGAAATGGAGCCATTGATTATATTGAGTTTATATCGGCAACCATGCACATGAATAGAATGGAAAGAGAGGACCACCTATACAAAGCCTTTGAATATTTTGACAAGGATAAGAGCGGGTATATCACTAAGGAAGAGTTGGAATCTGCCCTTAGGAAGTATAATATGGGTGATGAGAAAACTATAAAGGAGATCATTGCTGAAGTTGACTCAGACAATGATGGAAAAATTAATTACGATGAGTTCGCGGCCATGATGAGGAAAGGCAACCCGGACTTCGTAAACAACAGACGGCGCTAA 1566 0.4598 MGNCSGAASGDSQPGNSDATHSGPPHQRNNGITVLPPDSNPSRPHPPSKPVLSSSVGRVLGRPMEDVRSTYIFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLVNRDDLEDIRREVQIMHHLTGHRNIVELKGAYEDRYSVNLIMELCAGGELFDRIIAKGHYSERAASDLCRQIVTVVHDCHTMGVTHRDLKPENFLFLSKEESSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFNSILRGHIDFVSDPWPSISSSAKDLIKKMLQANPKDRLSAVDVLNHAWMREDGDASDKPLDIAVLSRMKQFQAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFDELKAGLHKLGSKLSESEIRQLMEAADVDGNGAIDYIEFISATMHMNRMEREDHLYKAFEYFDKDKSGYITKEELESALRKYNMGDEKTIKEIIAEVDSDNDGKINYDEFAAMMRKGNPDFVNNRRR 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1017 521 ProSiteProfiles EF-hand calcium-binding domain profile. 372 407 IPR002048 GO:0005509
Lele55g1017 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 68 504 - -
Lele55g1017 521 ProSitePatterns EF-hand calcium-binding domain. 421 433 IPR018247 -
Lele55g1017 521 Gene3D Phosphorylase Kinase; domain 1 73 156 - -
Lele55g1017 521 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Lele55g1017 521 ProSiteProfiles EF-hand calcium-binding domain profile. 408 443 IPR002048 GO:0005509
Lele55g1017 521 CDD STKc_CAMK 71 328 - -
Lele55g1017 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Lele55g1017 521 SUPERFAMILY EF-hand 368 509 IPR011992 -
Lele55g1017 521 ProSiteProfiles EF-hand calcium-binding domain profile. 480 514 IPR002048 GO:0005509
Lele55g1017 521 SUPERFAMILY Protein kinase-like (PK-like) 45 351 IPR011009 -
Lele55g1017 521 FunFam calcium-dependent protein kinase 1 157 336 - -
Lele55g1017 521 SMART efh_1 448 476 IPR002048 GO:0005509
Lele55g1017 521 SMART efh_1 412 440 IPR002048 GO:0005509
Lele55g1017 521 SMART efh_1 483 511 IPR002048 GO:0005509
Lele55g1017 521 SMART efh_1 376 404 IPR002048 GO:0005509
Lele55g1017 521 ProSiteProfiles Protein kinase domain profile. 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele55g1017 521 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
Lele55g1017 521 FunFam Calcium-dependent protein kinase 1 337 512 - -
Lele55g1017 521 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Lele55g1017 521 FunFam Calcium-dependent protein kinase 1 73 156 - -
Lele55g1017 521 Pfam EF-hand domain pair 377 437 IPR002048 GO:0005509
Lele55g1017 521 Pfam EF-hand domain pair 447 509 IPR002048 GO:0005509
Lele55g1017 521 Pfam Protein kinase domain 73 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele55g1017 521 MobiDBLite consensus disorder prediction 1 37 - -
Lele55g1017 521 MobiDBLite consensus disorder prediction 1 57 - -
Lele55g1017 521 Gene3D - 338 512 - -
Lele55g1017 521 ProSitePatterns EF-hand calcium-binding domain. 385 397 IPR018247 -
Lele55g1017 521 Gene3D Transferase(Phosphotransferase) domain 1 157 337 - -
Lele55g1017 521 SMART serkin_6 71 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele55g1017 521 ProSitePatterns EF-hand calcium-binding domain. 492 504 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1017 Lele-ChrLele55 8314680 8331059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1017 57 521 EF-hand Containing Proteins AT4G23650 80.215 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele55g1017 Pkinase 8.8e-71 CL0016