Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1006 ATGACGACTCGAATAGCGCCCGGTGTGGGAGCAAACTTGTTGGGTCAACACGCCGCAGAGAGGAATCAAGATGCTACAGCTTATGTTGGCAATCTCGATCCCCAGGTATCTGAGGAGTTATTATGGGAGCTGTTTGTTCAGGCAGGTCCAGTTGTTAATGTCTATGTTCCCAAAGACAGAGTGACTAACCAACATCAAGGTTATGGTTTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTTCTTAATATGATTAAGCTTTATGGAAAACCAATACGTGTAAACAAGGCTTCCCAAGACAAAAAGAGCTTGGATGTGGGAGCAAATCTTTTCATTGGAAACCTTGATCCTGATGTGGATGAGAAACTCTTGTATGATACATTCAGTGCCTTTGGAGTAATTGTTACAAATCCCAAGATCATGAGAGATCCCGAAACAGGAAATTCTCGTGGATTTGGCTTCATTAGCTATGATTCATTCGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGGCAGTATCTTTGCAATCGTCAAATAACAGTGTCTTATGCATACAAGAAAGACACCAAAGGGGAAAGGCACGGCACTCCAGCTGAAAGAGTTCTGGCTGCCAGCAATCCAACTGCTCAGAAGAGCAGGCCTCACACTTTGTTTGCCAGCGGACCTCCGACACTTCCCAATGTCCCTCAGGCTAACGGTGCCATTCCTGCTCCGGTGCCTTCTCGTCCTTATGCTAATGGAGTTGCTCCCCCAGCTATTCCCGCCCTTCGACCACCACCTCCTCAAGCTGCACCATTTCCACCTTTTCCAGTAGCCCCTCAACCAGCATGGCATCAGCAGCAAACAGGTCAAACAATGCCTCCGCCTCCTGTCCAGCAGTTCAGGCCACCTCACTCAAGTATGCCACCTCCTCCACCTCCACAAGCGGTGCCTGCTCCCCCAAGGCCTCTTCCACCACCAGCTGCAATGACAGGCCAACAACCTGTTTGGCGGCCACCTCCTCCCTATCCACCGCAGCAACAGGGTGTGCGGCCCCCTCCATTCCCTTAA 1065 0.4958 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPNVPQANGAIPAPVPSRPYANGVAPPAIPALRPPPPQAAPFPPFPVAPQPAWHQQQTGQTMPPPPVQQFRPPHSSMPPPPPPQAVPAPPRPLPPPAAMTGQQPVWRPPPPYPPQQQGVRPPPFP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1006 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Lele55g1006 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Lele55g1006 354 Gene3D - 111 200 IPR012677 -
Lele55g1006 354 CDD RRM2_SF3B4 111 193 IPR034159 -
Lele55g1006 354 FunFam Splicing factor 3b subunit 4 16 108 - -
Lele55g1006 354 MobiDBLite consensus disorder prediction 248 279 - -
Lele55g1006 354 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 347 - -
Lele55g1006 354 MobiDBLite consensus disorder prediction 294 354 - -
Lele55g1006 354 FunFam splicing factor 3B subunit 4 109 200 - -
Lele55g1006 354 MobiDBLite consensus disorder prediction 208 232 - -
Lele55g1006 354 CDD RRM1_SF3B4 28 100 IPR034158 -
Lele55g1006 354 PRINTS Proline rich extensin signature 212 228 - -
Lele55g1006 354 PRINTS Proline rich extensin signature 265 281 - -
Lele55g1006 354 PRINTS Proline rich extensin signature 312 337 - -
Lele55g1006 354 PRINTS Proline rich extensin signature 243 264 - -
Lele55g1006 354 PRINTS Proline rich extensin signature 291 308 - -
Lele55g1006 354 Gene3D - 16 110 IPR012677 -
Lele55g1006 354 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Lele55g1006 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Lele55g1006 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Lele55g1006 354 SMART rrm1_1 26 99 IPR000504 GO:0003723
Lele55g1006 354 SMART rrm1_1 113 187 IPR000504 GO:0003723
Lele55g1006 354 MobiDBLite consensus disorder prediction 193 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1006 Lele-ChrLele55 7980553 7992598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g1006 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 36.145 3.09e-06 47.0