Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0953 ATGGCCGGCGGAGCTGCCAGCGCTGTTACCGGAGATCGAACTCCGGAGCTTATTGGTCTAGTTCATGACATTGTTGGAATGTGCGGTGGAGTTGGGGGATCCTCTTCTCCTACTGCCATGGACGCCGATGCTATGTTCAAGAAGGATTGCACCGATCTGGTTCGTCGGATCTCTTTACTTACGTATTTGTTCGAGGAGATTAGGGACTCGAAGGAGGCCGTCATTGATTCTGGAAATTCTGATGCTTCTACTTCGTCTACTGGTTCTGCATCTTCGTGGTCCTATGATCTTGTGCTCGCTCTCCACTCAGTAAAGCGCCTTATTTCAGTTGCTAGGAACTTCCGTTCTAATTCATCTTCTGATGGAGCTGCCAAGACAATTGTATTCCAATTTCAGTGTGTGACATGGAAATTGGAAAACCTATTAAGCGTCCTACCCTATGATGATCTCGATGTATCAGAGGAAGTCAGGGAACAGGTGGAGTTGGTCAGAACACAATTGAGACGAGCCACTGAAAAATATGAATTTATGATTTCAAAGCTGTCATCTTATGACTTATCTCAGCCAATGGCTCTAGAAATTAGTCAAAATCTTGGTAGATCAGTGAGTGGATTGCATAAACAGCATAGCTGCCCTGATCATTTATCAGATCTAGATAGCATTACTAGAAGCAATGGATGGACAAGTTGCAGCTCTAATCAGACAAGCCCTCGCTTGGAAAGGGCACAGAGCATTCCTGCATCATCTGAGGTTTCATTATCAAATCTTGTTGATCCTGAAGGTCAAGAAAATTCTGTGAAGAAGAATCTGACTGATGTGAAAAAGCCTGAGGCAATTCGTATTCCTGAAGATTATCTCTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTGGCCACGGGTCAGACATATGAGAGATCTTACATCCAGAGATGGATAGATGGGGGAAATACAACATGTCCAAAAACTCAGCAGAAGCTCCAACATTTGACACTTACCCCAAACTATGTGTTAAGGAGCCTTATAACTCAGTGGTGTATGGAGCATAATATTGAGCAGCCAACAGGACTTACAAATGGCAAGATAAAAAAGAGTGATGGATCATTCAGAGATGTTACGGGTGACATGGAAGCCATTGGAGCTCTTGTCCAGAAACTCTCTAGCCACAACATCGAGGAGCGTAGAGCGGCTGTTGCTGAAATTCGATCACTTTCCAAACGAAGTACAGTTAACAGAATACTAATTGCTGAAGCAGGAGCAATCCCAATTCTTGTTAACCTTTTAACATCAGAAGATGTGTTGACTCAAGAAAATGCCGTTACTTCCATTCTCAACCTCTCTATCTACGAGAACAACAAAGGACTTATAATGCTTGCTGGTGCCATCCCATCCATTGTCCAAATCCTAAGAGCTGGAAGTATGGAAGCAAGAGAAAACGCAGCAGCAACCCTCTTTAGCTTGTCACTTGCAGATGAGAACAAAATAATTATCGGTGCCTCCGGAGCTCTCCTCGCTTTGGTAGAATTGCTCCAAAATGGGAGCCCTAGAGGGAAGAAGGATGCCGCAACCGCATTATTCAACTTATGCATATATCCAGGAAACAAAGGCAGGGCCATAAGAGCAGGGATCATTACAGCATTGTTGAAGATGCTTACAGATTCAAGCAAATCTATGGTCGACGAAGCCTTGACGATAATTTCGGTTCTTGCCGGCCACCAAGAAGCAAAAATTGCTATTGTAAAGGCCAGCACTATACCTGTTCTTATCGATCTATTGAGGACCGGATTTCCTCGAAACAAGGAAAACGCAGCCGCCATTTTACTGGCCTTGTGTAAGAGGGATCCCGAAAATCTGGCGTGTATAAACAGACTTGGTGTTATCATACCTTTGACAGAACTTGCTCGGAGTGGCACAGAGAGGGCTAAAAGGAAGGCTACTTCACTCTTAGAGCATCTTCGTAAGTTACAACATATTTGA 1983 0.4397 MAGGAASAVTGDRTPELIGLVHDIVGMCGGVGGSSSPTAMDADAMFKKDCTDLVRRISLLTYLFEEIRDSKEAVIDSGNSDASTSSTGSASSWSYDLVLALHSVKRLISVARNFRSNSSSDGAAKTIVFQFQCVTWKLENLLSVLPYDDLDVSEEVREQVELVRTQLRRATEKYEFMISKLSSYDLSQPMALEISQNLGRSVSGLHKQHSCPDHLSDLDSITRSNGWTSCSSNQTSPRLERAQSIPASSEVSLSNLVDPEGQENSVKKNLTDVKKPEAIRIPEDYLCPISLELMRDPVIVATGQTYERSYIQRWIDGGNTTCPKTQQKLQHLTLTPNYVLRSLITQWCMEHNIEQPTGLTNGKIKKSDGSFRDVTGDMEAIGALVQKLSSHNIEERRAAVAEIRSLSKRSTVNRILIAEAGAIPILVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLADENKIIIGASGALLALVELLQNGSPRGKKDAATALFNLCIYPGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIISVLAGHQEAKIAIVKASTIPVLIDLLRTGFPRNKENAAAILLALCKRDPENLACINRLGVIIPLTELARSGTERAKRKATSLLEHLRKLQHI 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0953 660 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Lele55g0953 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 359 IPR013083 -
Lele55g0953 660 Gene3D - 559 659 IPR011989 -
Lele55g0953 660 Pfam Armadillo/beta-catenin-like repeat 411 449 IPR000225 GO:0005515
Lele55g0953 660 Pfam Armadillo/beta-catenin-like repeat 493 531 IPR000225 GO:0005515
Lele55g0953 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 462 504 IPR000225 GO:0005515
Lele55g0953 660 SUPERFAMILY RING/U-box 278 355 - -
Lele55g0953 660 Gene3D - 457 558 IPR011989 -
Lele55g0953 660 FunFam RING-type E3 ubiquitin transferase 280 355 - -
Lele55g0953 660 Pfam U-box domain 281 352 IPR003613 GO:0004842|GO:0016567
Lele55g0953 660 Coils Coil 153 173 - -
Lele55g0953 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Lele55g0953 660 FunFam RING-type E3 ubiquitin transferase 458 558 - -
Lele55g0953 660 SMART arm_5 451 491 IPR000225 GO:0005515
Lele55g0953 660 SMART arm_5 492 532 IPR000225 GO:0005515
Lele55g0953 660 SMART arm_5 574 614 IPR000225 GO:0005515
Lele55g0953 660 SMART arm_5 533 573 IPR000225 GO:0005515
Lele55g0953 660 SMART arm_5 616 656 IPR000225 GO:0005515
Lele55g0953 660 SMART arm_5 409 450 IPR000225 GO:0005515
Lele55g0953 660 Gene3D - 363 456 IPR011989 -
Lele55g0953 660 MobiDBLite consensus disorder prediction 229 264 - -
Lele55g0953 660 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Lele55g0953 660 SUPERFAMILY ARM repeat 378 654 IPR016024 -
Lele55g0953 660 CDD RING-Ubox_PUB 285 327 IPR045210 -
Lele55g0953 660 FunFam RING-type E3 ubiquitin transferase 560 659 - -
Lele55g0953 660 MobiDBLite consensus disorder prediction 229 267 - -
Lele55g0953 660 FunFam RING-type E3 ubiquitin transferase 364 457 - -
Lele55g0953 660 PANTHER U BOX DOMAIN-CONTAINING 45 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0953 Lele-ChrLele55 7048921 7051864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0953 1 656 U-box Gene Family AT1G23030 60.274 0.0 717