LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele55g0952	ATGAGGAAACCTTTCGGTGATAATAAGGTGGTTTTGAACAGAGGAGCTTGGTCTAAACAAGAAGATCAGAAACTCATTGATTACATCAAGAAACATGGCGATGGTTGCTGGCGTACCCTCCCTCAAGCTGCTGGGTTACTTCGCTGCGGCACAAGTTGTAGGCTGAGATGGATAAACTATCTGAGGCCAAACATTAAAAGGGGAAACTTTGCTAAAGATGAAGAAGATCTCATTATCAAGCTTCATGCCCTCCTAGGCAACCGGTGGTCCCTGATAGCTGGAAGATTACCGGGGAGGACAGACAATGAGGTGAAGAACTATTGGAACTATCACCTGAGAAAAAAGCTCATAAACATGGGAATTGATCCGAATAACCATCGGTTAACTCGAAATCTACCATTAATGTCTGGAAGCTCAGCATCATCATACAACAGCCTGGAATACGACGAGGATGACAACAACGACAACAACTATAGTAATAGCGTCAAGAATGATGATGATGAGCCAAATAAAAAACTTTACGCTGATGATAAAAACTCTAATTGTGATCAAGTACTCTCAGATGCAGCAAGTGGTTTAGATGAAGAAGATTCATTTTGCATACCAGATTTGAACCTCGACCTCACTATGACGAGGAGCAGTGATGAAATTATCTCTTCTTCTTCTTCTTCTTCACCTCCTCCAGATCCAAAGCCAATTCATGAATATTCTAGAACTTCAACTGAACTTCTTCTGTTTAGGTGA	744	0.414	MRKPFGDNKVVLNRGAWSKQEDQKLIDYIKKHGDGCWRTLPQAAGLLRCGTSCRLRWINYLRPNIKRGNFAKDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNYHLRKKLINMGIDPNNHRLTRNLPLMSGSSASSYNSLEYDEDDNNDNNYSNSVKNDDDEPNKKLYADDKNSNCDQVLSDAASGLDEEDSFCIPDLNLDLTMTRSSDEIISSSSSSSPPPDPKPIHEYSRTSTELLLFR	247

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele55g0952	247	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Lele55g0952	247	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Lele55g0952	247	Gene3D	-	14	66	-	-
	Lele55g0952	247	MobiDBLite	consensus disorder prediction	161	178	-	-
	Lele55g0952	247	SUPERFAMILY	Homeodomain-like	13	108	IPR009057	-
	Lele55g0952	247	FunFam	MYB transcription factor	68	129	-	-
	Lele55g0952	247	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Lele55g0952	247	Gene3D	-	68	133	-	-
	Lele55g0952	247	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Lele55g0952	247	SMART	sant	13	63	IPR001005	-
	Lele55g0952	247	SMART	sant	66	114	IPR001005	-
	Lele55g0952	247	MobiDBLite	consensus disorder prediction	143	179	-	-
	Lele55g0952	247	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	204	-	-
	Lele55g0952	247	FunFam	MYB-related transcription factor	13	66	-	-
	Lele55g0952	247	CDD	SANT	16	61	IPR001005	-
	Lele55g0952	247	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Lele55g0952	247	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Lele55g0952	247	MobiDBLite	consensus disorder prediction	212	247	-	-
	Lele55g0952	247	CDD	SANT	69	112	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele55g0952	Lele-ChrLele55	7031511	7032730	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele55g0952	9	215	MYB Transcription Factor Family	AT4G38620	49.057	8.12e-69	211

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele55g0952		Myb_DNA-binding	3.4e-14	CL0123