Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0926 ATGGCTTCACGCAGATTGTTATCGTCTCTGATTCGATCCTCATTACATCGATCTCCATTGAAGTCATCGGTTACTAGCTCAAGGCCCAGGATTTCTTCCCCGAACGTTGGAGGTCGTCCCTCTCCGTATGGCTACCTCCTCACCCGCTTCGCTGACTACGCCACATCTGCGGCAGCTACTACGCCACCGGCTCCGGCGAAGAAGAGTTCCATTGGTGGCGGTGATGGGAAGATCGTCGACGAATTCACCGGCAAAGGTGCGATTGGGCAAGTGTGCCAGGTCATTGGTGCCGTTGTCGATGTTAGATTCGAGGAGGGTCTGCCACCGATCTTGACTGCACTTGAGGTTATGGATCACTCGATCCGATTGGTGCTGGAGGTGGCGCAACACTTGGGTGAGAACATGGTTAGAACTATTGCCATGGATGGGACTGAGGGGGTTGTTAGAGGACAGCGCGTGCTCAACACTGGATCGCCCATCACCGTTCCTGTTGGTAGAGCAACCCTTGGCCGCATCATTAATGTTATTGGGGAGGCTATTGACGAGAAGGGTGATCTTAAAACTGAGCACTACTTGCCCATCCATAGAGAAGCTCCTGCCTTTGTTGAACAGGCAACTGAGCAGCAGATTCTTGTTACAGGGATCAAGGTTGTGGATCTTCTTGCTCCATACCAAAGGGGAGGAAAGATTGGGTTGTTTGGTGGTGCTGGTGTAGGAAAAACGGTGCTCATTATGGAACTTATTAATAATGTTGCAAAGGCTCATGGTGGTTTCTCTGTCTTTGCTGGTGTTGGAGAAAGAACCCGAGAGGGAAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGGAGAGAAGCAGAGTGAAAGCAAGTGTGCTCTTGTGTATGGTCAAATGAATGAGCCTCCTGGTGCTCGTGCCCGTGTCGGTCTTACTGGGCTTACTGTGGCTGAACACTTCCGTGATGCTGAAGGGCAAGATGTGCTTCTCTTCATTGACAACATTTTCCGTTTTACTCAAGCCAACTCAGAGGTGTCTGCTTTGCTTGGTCGTATTCCATCTGCTGTTGGTTACCAACCAACATTGGCTACTGATCTTGGAGGTCTTCAGGAACGTATTACAACCACCAAGAAAGGTTCAATTACCTCTGTCCAAGCTATATATGTGCCTGCTGATGACTTGACTGATCCAGCTCCTGCTACCACCTTTGCTCACTTGGATGCTACAACCGTGTTATCACGACAGATCTCCGAGTTGGGTATCTATCCTGCTGTTGACCCTCTAGATTCTACATCTCGTATGCTTTCCCCACTTATTTTGGGTGAGGACCACTATAATACTGCTCGTGGTGTACAAAAGGTCCTTCAGAACTATAAGAATCTTCAAGATATCATTGCCATTTTGGGAATGGATGAGCTCAGTGAAGATGATAAGTTGACTGTTGCCCGTGCACGTAAAATTCAAAGGTTTTTGAGCCAGCCTTTCCACGTTGCAGAAGTGTTCACTGGTGCTCCAGGCAAATATGTAGATTTGAAGGAGAGCATTAACAGCTTCCAGGGTGTGTTGGATGGCAAATATGACGACCTTCCAGAGCAATCATTTTATATGGTTGGAGGTATTGATGAGGTCGTTGCCAAGGCTGACAAGATTGCTAAGGAATCAACTTAG 1677 0.48 MASRRLLSSLIRSSLHRSPLKSSVTSSRPRISSPNVGGRPSPYGYLLTRFADYATSAAATTPPAPAKKSSIGGGDGKIVDEFTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVMDHSIRLVLEVAQHLGENMVRTIAMDGTEGVVRGQRVLNTGSPITVPVGRATLGRIINVIGEAIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKESINSFQGVLDGKYDDLPEQSFYMVGGIDEVVAKADKIAKEST 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0926 558 CDD ATP-synt_F1_beta_C 442 549 - -
Lele55g0926 558 CDD F1-ATPase_beta 159 440 - -
Lele55g0926 558 FunFam ATP synthase subunit beta 77 159 - -
Lele55g0926 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 441 IPR027417 -
Lele55g0926 558 ProSitePatterns ATP synthase alpha and beta subunits signature. 426 435 IPR020003 GO:0005524
Lele55g0926 558 Gene3D - 78 159 - -
Lele55g0926 558 PIRSF ATPase_subunit_beta 7 558 - -
Lele55g0926 558 FunFam ATP synthase subunit beta 160 437 - -
Lele55g0926 558 FunFam ATP synthase subunit beta 438 557 - -
Lele55g0926 558 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 85 159 IPR036121 GO:0046034|GO:1902600
Lele55g0926 558 CDD ATP-synt_F1_beta_N 87 160 - -
Lele55g0926 558 Pfam ATP synthase alpha/beta family, beta-barrel domain 91 157 IPR004100 GO:0046034|GO:1902600
Lele55g0926 558 Pfam ATP synthase F1 beta subunit 1 49 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Lele55g0926 558 MobiDBLite consensus disorder prediction 18 37 - -
Lele55g0926 558 Hamap ATP synthase subunit beta [atpB]. 86 553 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lele55g0926 558 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 438 554 - -
Lele55g0926 558 SMART AAA_5 226 498 IPR003593 -
Lele55g0926 558 TIGRFAM atpD: ATP synthase F1, beta subunit 88 552 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lele55g0926 558 Gene3D ATP synthase, F1 beta subunit 1 53 IPR042079 -
Lele55g0926 558 Gene3D - 160 437 IPR027417 -
Lele55g0926 558 MobiDBLite consensus disorder prediction 18 34 - -
Lele55g0926 558 Gene3D - 438 558 IPR024034 -
Lele55g0926 558 PANTHER ATP SYNTHASE 70 555 - -
Lele55g0926 558 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 214 435 IPR000194 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0926 Lele-ChrLele55 6749102 6752909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0926 124 496 Primary Pumps ATPases(2) AT1G20260 28.928 9.26e-29 117