LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele55g0882	ATGAGTAGCAATGGCCAATCTTCCGGTAACAGTCATAACATCAGAGACTTAATCTGCAACGCCGGCGCTGGTGCCTCAGCTGGGGCAATAGCGGCCACATTTGTGTGCCCACTGGATGTCATCAAGACTAGACTTCAAGTTCATGGTCTCCCCCCTGGGCAGACAGGTAGTGTTATCATCTCGAGTTTGCAGAGCATAGCAAGGACTGAAGGTTTCCGGGGACTGTACCGTGGACTTTCACCGACAATACTAGCATTACTTCCAAACTGGGCGGTTTACTTCACAGTTTATGAGCAACTAAAAGGTGTGCTCCGTTCACATGATGGTTTCCACCAACTCAATACTGGTGAAAATATGATCGCTGCTGCTGGTGCTGGAGCAGCCACAGCAATTTCAACAAACCCTTTGTGGGTTGTTAAGACCAGACTTCAAACACAGGGAATGAGGTCAGATGTTGTTCCTTACAAAAGCGTTCTTTCTGCTCTGACAAGGATTACCCGTGAGGAAGGCATGCGAGGACTGTACAGTGGCATCTTGCCTTCATTGGCCGGCATAAGTCATGTTGCAATACAATTCCCATCCTATGAAAAGATTAAGTCATACATGGCAAAAAAGGAGAACACTACTGTTGACAAGCTAAGTCCGGGAAATGTTGCTATTGCATCTTCAATTTCCAAAGTAACTGCCTCTGTAATGACTTATCCTCATGAGGTGATACGATCCAGGCTACAGGAGCAAGGACAGGCCAAAAATATCAAGGTCCGGTATGCAGGGGTTTTTGATTGTATGAAGAAGGTTTTCCAGAAGGAAGGCTTTCCCGGATTTTATCGCGGTTGTGCTACCAATCTATTAAGAACAACTCCATCGGCTGTCATCACATTCACCAGTTATGAGATGATATACAGGTTCTTCCATCGTTTTGTACCTGAGGACAATGTATATCCACAAGGCTATCCTAAATCTAATGATCTTAACAAGCCCAAGCCAGAAGACAGTGATGACATAAAGTTTGAAAAAGGCCCTATGGTATGA	1032	0.4516	MSSNGQSSGNSHNIRDLICNAGAGASAGAIAATFVCPLDVIKTRLQVHGLPPGQTGSVIISSLQSIARTEGFRGLYRGLSPTILALLPNWAVYFTVYEQLKGVLRSHDGFHQLNTGENMIAAAGAGAATAISTNPLWVVKTRLQTQGMRSDVVPYKSVLSALTRITREEGMRGLYSGILPSLAGISHVAIQFPSYEKIKSYMAKKENTTVDKLSPGNVAIASSISKVTASVMTYPHEVIRSRLQEQGQAKNIKVRYAGVFDCMKKVFQKEGFPGFYRGCATNLLRTTPSAVITFTSYEMIYRFFHRFVPEDNVYPQGYPKSNDLNKPKPEDSDDIKFEKGPMV	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele55g0882	343	MobiDBLite	consensus disorder prediction	318	343	-	-
	Lele55g0882	343	Gene3D	Mitochondrial carrier domain	3	109	IPR023395	-
	Lele55g0882	343	Gene3D	Mitochondrial carrier domain	110	310	IPR023395	-
	Lele55g0882	343	MobiDBLite	consensus disorder prediction	324	343	-	-
	Lele55g0882	343	PRINTS	Mitochondrial carrier protein signature	222	244	IPR002067	GO:0055085
	Lele55g0882	343	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Lele55g0882	343	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Lele55g0882	343	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Lele55g0882	343	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085
	Lele55g0882	343	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Lele55g0882	343	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	213	303	IPR018108	-
	Lele55g0882	343	Pfam	Mitochondrial carrier protein	213	305	IPR018108	-
	Lele55g0882	343	Pfam	Mitochondrial carrier protein	20	106	IPR018108	-
	Lele55g0882	343	Pfam	Mitochondrial carrier protein	113	205	IPR018108	-
	Lele55g0882	343	SUPERFAMILY	Mitochondrial carrier	15	299	IPR023395	-
	Lele55g0882	343	FunFam	Nicotinamide adenine dinucleotide transporter 2, mitochondrial	16	304	-	-
	Lele55g0882	343	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	113	201	IPR018108	-
	Lele55g0882	343	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	16	308	IPR044712	GO:0006862\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele55g0882	Lele-ChrLele55	6194802	6199135	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele55g0882	1	311	Chloroplast and Mitochondria Gene Families	AT1G25380	70.794	8.04e-148	419

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele53g0606	53	16198394	16202948	Lele55g0882	55	6194802	6199135	hybridization
	Lele54g0615	54	13039210	13044347	Lele55g0882	55	6194802	6199135	hybridization