Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0879 ATGGCGCTATCCTCTCTCCTCTCTCTACTTGTTTTCTTCTTCTTCTTCTTCTTAGTTTCTCATTTGCTTCTTCCCGCTGAAGCATCCATAAACCAAGATTTAGAAGCTCTCATGGCGTTCAAAGCCGCTTCTGATAATCACAACAAGCTCACATCTTGGAACTCCACCACCCAACCCTGTAACTGGGTCTTTGTCTCATGCCTCAAGAATCGAGTTTCGCGACTTGTTCTTGAAAATCTCGACCTTCATGGTTCTATCGAGCCGTTAACTTCGCTCACTCAGCTTCGAGTTCTGAGCCTGAAGCGAAACCGTTTCTCCGGCCCCATTCCCAGTCTGTCGAATTTCACAGCTCTGAAGCTTCTGTTTCTTTCTCATAATGACTTCTCCGGTGCGTTTCCGGTGTCGGCTACGTCACTTCTCCGCTTGTATCGCCTTGATCTGTCTCACAATAACTTTTCCGGCGACATTCCAACTTCCGTCGACAATCTGACTCACCTTCTCTCCCTCCGTCTCAATGATAACCAGTTCTCCGGTTACATTCCCGTTCTAAACCTCTCCAAACTCCAAGACTTCAATGTCTCCGGTAACCGCCTCTCCGGCGAATCCCCAAATCAGTCTCGGGTTTCCCGTCAAGAAAAGGGAACCGAGGACCCGGAAGGCCGAGGCCTGGCCTTCATACATGGCTCATGCAAAGCCCTTAAGCTCACCCACGGTAACATCAAATCCACCAATATCCTCATTGACCAGGACGGTGACCCACACTTGGCAGATTTCGGGCTCTCCGTTTTCGCAACCCCAGCCCCCAAATCGAACGGCTATCGTGCACCAGAAGCAGTGGACGGTCTGAAGAACACGCAGAAGTCCGACGTGCACTCCTTTGGTGTTCTTCTGCTGGAGCTTCTCACGGGGAAGTGCCCCTCCCTAGGGGATGCTGGTGGGCCAGGAGGAGGTGGGGCCGTGGACTTACCCAGGTGGGTCCAGTCAGTGGTGAGAGAGGAATGGACGGCTGAGGCGTTTGATATTGAGCTCATGAGGTACAAGGACATTGAAGAGGAGATGGTGGGGTTGCTTCAGATTGCCATGTCTTGTTGCGCGGCTTTGCCAGATCAACGGCCCAGGATGAGCCACGTGGTGAAGATGATCGAGGACTTACGTGGGGTTGAGATGTCGCCGAGTCATGAGACGTCGGACTCGGGGTCTGAGTCGCCATCCTTGTCGGGCTAG 1224 0.5253 MALSSLLSLLVFFFFFFLVSHLLLPAEASINQDLEALMAFKAASDNHNKLTSWNSTTQPCNWVFVSCLKNRVSRLVLENLDLHGSIEPLTSLTQLRVLSLKRNRFSGPIPSLSNFTALKLLFLSHNDFSGAFPVSATSLLRLYRLDLSHNNFSGDIPTSVDNLTHLLSLRLNDNQFSGYIPVLNLSKLQDFNVSGNRLSGESPNQSRVSRQEKGTEDPEGRGLAFIHGSCKALKLTHGNIKSTNILIDQDGDPHLADFGLSVFATPAPKSNGYRAPEAVDGLKNTQKSDVHSFGVLLLELLTGKCPSLGDAGGPGGGGAVDLPRWVQSVVREEWTAEAFDIELMRYKDIEEEMVGLLQIAMSCCAALPDQRPRMSHVVKMIEDLRGVEMSPSHETSDSGSESPSLSG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0879 407 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Lele55g0879 407 Pfam Protein kinase domain 221 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele55g0879 407 MobiDBLite consensus disorder prediction 386 407 - -
Lele55g0879 407 ProSiteProfiles Protein kinase domain profile. 83 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele55g0879 407 Gene3D Transferase(Phosphotransferase) domain 1 220 400 - -
Lele55g0879 407 FunFam Leucine-rich repeat receptor-like protein kinase 30 182 - -
Lele55g0879 407 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 211 - -
Lele55g0879 407 MobiDBLite consensus disorder prediction 195 221 - -
Lele55g0879 407 SMART serkin_6 89 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele55g0879 407 MobiDBLite consensus disorder prediction 391 407 - -
Lele55g0879 407 MobiDBLite consensus disorder prediction 195 209 - -
Lele55g0879 407 Gene3D Ribonuclease Inhibitor 138 216 IPR032675 -
Lele55g0879 407 Gene3D Ribonuclease Inhibitor 32 137 IPR032675 -
Lele55g0879 407 SUPERFAMILY Protein kinase-like (PK-like) 221 381 IPR011009 -
Lele55g0879 407 SUPERFAMILY L domain-like 36 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0879 Lele-ChrLele55 6155906 6158618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0879 220 406 Receptor kinase-like Gene Family AT1G68400 68.586 1.18e-84 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lele55g0879 Pkinase 2.5e-17 CL0016