LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele55g0871	ATGTCTGCTATAACAAAGAGAGATATTAAGATGTGTTCTAAAGAAGAAGAAGGTAGTGCTGAAATGAGAAGAGGCCCTTGGACTCTTGAAGAAGACAGCCTCCTCATTCACTATATCGCTCGCCATGGCGAAGGTCGCTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGAATGGGAAGAGTTGCAGACTGAGATGGCTGAATTACTTGAAACCAGATATCAAGAGAGGAAACCTTACCCCACAAGAACAGCTTTTGATCCTAGATCTTCATTCTAGGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTTCCAGGAAGAACTGACAATGAGATCAAGAACTATTGGAGAACCAGAGTTCAGAAACAAGCTCGCCAACTCAACATTGAATCTGGAAGCAAGAAATTCATAGATGCAATTCGGTGTTTCTGGATGCCAAGATTAGTTCAAAAATCTGAACAGAAACAGAACTCTCCTTCAACTACCTCGTACTCTTCTCTAACAGACACGAACCTTCATGTTTCTTCTTCAGCATTATCTTCTCCAATGTTGTCAACCAACAACAACTCTGTTATACCTTATTCTCTGTCTTGTTCAACATCATCAACATCATCTTTCCAGGAGGCTACTGCAAATTTTCCCAGCAGTTTCTGCTCCAATAATCCCAGCAATTTTGCATCTGCAGATTCCTGGCAATTCTCGCAGCAGCAGATTCTGGAACCTTCTTCTTCAGAACTCGCAGCAAGTCCTTCTTGTTACATGTTAGAGAACAATAATAATGCTTGTTACAGCAACCCAATTCAGGAGAACTTGTTGGTGATGAACAATATTATGGCAACTACTTCTTCTGGGTATGGAATGGATAATAATAATCTGATGAACCTGCAGCAAGAACCAGCGACGACTACAATGATGGAAACGTACGACGACATGTTGCCGTTTGATTATTATCATTATCATCAGCCAACTATAGCAGAAAGTGACTGGACGACGTTAGGAAACATGGCAGATACTTTATGGAACATGGAAGCTCTGTGA	1044	0.4138	MSAITKRDIKMCSKEEEGSAEMRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRNGKSCRLRWLNYLKPDIKRGNLTPQEQLLILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKKFIDAIRCFWMPRLVQKSEQKQNSPSTTSYSSLTDTNLHVSSSALSSPMLSTNNNSVIPYSLSCSTSSTSSFQEATANFPSSFCSNNPSNFASADSWQFSQQQILEPSSSELAASPSCYMLENNNNACYSNPIQENLLVMNNIMATTSSGYGMDNNNLMNLQQEPATTTMMETYDDMLPFDYYHYHQPTIAESDWTTLGNMADTLWNMEAL	347

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele55g0871	347	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	19	71	IPR017930	-
	Lele55g0871	347	Gene3D	-	24	76	-	-
	Lele55g0871	347	ProSiteProfiles	Myb-like domain profile.	72	122	IPR001005	-
	Lele55g0871	347	ProSitePatterns	Phosphoglycerate mutase family phosphohistidine signature.	39	48	IPR001345	GO:0003824
	Lele55g0871	347	ProSiteProfiles	Myb-like domain profile.	19	71	IPR001005	-
	Lele55g0871	347	CDD	SANT	26	71	IPR001005	-
	Lele55g0871	347	CDD	SANT	81	120	IPR001005	-
	Lele55g0871	347	Gene3D	-	80	122	-	-
	Lele55g0871	347	SUPERFAMILY	Homeodomain-like	22	118	IPR009057	-
	Lele55g0871	347	FunFam	Myb transcription factor	24	76	-	-
	Lele55g0871	347	FunFam	MYB transcription factor	81	144	-	-
	Lele55g0871	347	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	72	126	IPR017930	-
	Lele55g0871	347	Pfam	Myb-like DNA-binding domain	77	120	IPR001005	-
	Lele55g0871	347	Pfam	Myb-like DNA-binding domain	24	71	IPR001005	-
	Lele55g0871	347	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	20	207	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Lele55g0871	347	SMART	sant	76	124	IPR001005	-
	Lele55g0871	347	SMART	sant	23	73	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele55g0871	Lele-ChrLele55	6056673	6057988	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele55g0871	21	166	MYB Transcription Factor Family	AT1G68320	80.137	1.94e-84	255

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele55g0871		Myb_DNA-binding	6.1e-14	CL0123