Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0870 ATGGATCATCAACGGCTTAAGTTTCCACTGATTCAGTCATCAGAAAGCCTAGGGGAGAATTCTTCTTCTCTACAACATTCTGTAGATTTTCCAGAAATCAGAAAGAAAGCAGTTGGATTCAAAAGGAAGAGAAACAACAAGAGGATTGAAGAGAAACAGAAAGAAGTAATCCATGTCAGAGCAAAAAGAGGTCAAGCTACTGATAGCCACAGTTTAGCAGAACGGGTGAGAAGAAAGAGAATCAATGAGAAGATGAGATGTTTGCAGGACCTGGTTCCAGGCTGCTACAAGGCAATGGGAATGGCAGTTATGTTAGAGGTGATCATAAATTATGTTCTATCACTACAGCAACAGATTGAGTTTCTCTCCATGAAGCTCTCAGCAGCAAGCATGTGTTTTGATTTCAACACCTACCACATAGATACCCTCCAAACCATGCAGGTACCCCTTTACTCTCATTCGTGTTCTGTACTTGTTTCACATAACTACATATTGTTATGA 501 0.4032 MDHQRLKFPLIQSSESLGENSSSLQHSVDFPEIRKKAVGFKRKRNNKRIEEKQKEVIHVRAKRGQATDSHSLAERVRRKRINEKMRCLQDLVPGCYKAMGMAVMLEVIINYVLSLQQQIEFLSMKLSAASMCFDFNTYHIDTLQTMQVPLYSHSCSVLVSHNYILL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0870 166 Pfam Helix-loop-helix DNA-binding domain 69 115 IPR011598 GO:0046983
Lele55g0870 166 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 37 140 IPR024097 GO:0006355
Lele55g0870 166 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 63 135 IPR036638 GO:0046983
Lele55g0870 166 Gene3D - 65 128 IPR036638 GO:0046983
Lele55g0870 166 SMART finulus 71 121 IPR011598 GO:0046983
Lele55g0870 166 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 115 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0870 Lele-ChrLele55 6047076 6048201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0870 51 147 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 74.227 6.88e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele55g0870 HLH 4.4e-05 No_clan