Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0857 ATGACTTCTGCTAAGAACGCCGCCAGCGCCGTCGGCGGCAAGACCGCCAGAGCCTGCGACAGCTGCATGAGGAAGCGAGCTCGCTGGTACTGTGCCGCCGACGACGCTTTCCTCTGCCAGTCTTGTGACTCTCTGGTTCACTCCGCCAACCCATTGGCTCGCCGGCATGAAAGGCTCCGATTGAAAACTTCGTCGGTTAAATACTCCTCCTCTGCCTCCTCCGATGCATTCGTTTTAGCTGCCGTCGATCTCACTCTGGCTCCCTCGTGGCACAGAGGAATCACCAAGAAGCCTCGTACGCCTAGACATGGAAAGAACCAGTCCTCTTCTGCCCATCAAACGCCCAGAGGACGATACGATCCCACCAGAAACTCGTTCCATCTTGTGCCGGAAGTGGGTTCCGATGAATATTCCAATTCTCACGACGAAAACGAAGAGCAGCTTCTTTATCGGGTACCCATATTCGACCCGTTTGTTACAGAGCTATGTACTCCTCCGTCGTCCGCGACTTCAGCCGAAGCAGCAACAGCAGCTACGCCCGGTTCAAACCCGACGGACGACCATAAAGCCTCATCGGAAAACAAAAGCAATAATAATAATGGGGTGAACAATTTACACGGGTTTCTTCCATCTGAAATGGAACTCGCTCAGTTCGCCGCCGATGTAGAGAGTTTACTTGGCAGAGGATTAGAGAATGAGTGCATAGGCATGGAGGATTTAGGGCTTATTGGCAGTAAAGAGAAGGAGGAATCGAGGGAGTGTTGTGTGATGGGTAGTGAGAAAGTGAAGGTTGAAGATGATGAAGAGAGCCCATGTAAGATTGAAACTGCAGATGAGATTGGGATGGAGAAGGGAATCAGAGAACCATTTGAATTGAACTTCGATTATGATGACTCTCCGGCAGCACGCAAACAACCGGACGACAACGACATTGACGAGGACGAGGACGAGAAGAAGGTCGAGATGAGAAATAACGAAGGAGAACTCAAAGCAAATAGTAACCAGAGAAAGAGAAAGATACTGTTGCAGTTAGACTACGAAGCAGTTATTTCTGCTTGGGCATCGCAGAAATCTCCATGGATGACCGGCGGCAAACCAGAGTTAGACGCCGACGAGTGTTGGCCGGAGTGCATGGGGACGTGTGGGATGGAGCTTCATCAACCCTACTATGGAGAAATGGGGGCATACGGTGGTGGGTGCCAGGCCGGAGGGATGGGAGACGGAGGGAGAGAAGCGAGAGTAACGAGGTACAGAGAGAAGAGGAGGACGAGGTTGTTCTCAAAGAAAATAAGGTATGAGGTTCGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGCAGGTTTGTGAAGAGGGCTTCTTTTGCAGTTGCAACCCAACCGCCACCATCTTTATCTTCATGCCCTTTGCTGAGCAGATAA 1422 0.5077 MTSAKNAASAVGGKTARACDSCMRKRARWYCAADDAFLCQSCDSLVHSANPLARRHERLRLKTSSVKYSSSASSDAFVLAAVDLTLAPSWHRGITKKPRTPRHGKNQSSSAHQTPRGRYDPTRNSFHLVPEVGSDEYSNSHDENEEQLLYRVPIFDPFVTELCTPPSSATSAEAATAATPGSNPTDDHKASSENKSNNNNGVNNLHGFLPSEMELAQFAADVESLLGRGLENECIGMEDLGLIGSKEKEESRECCVMGSEKVKVEDDEESPCKIETADEIGMEKGIREPFELNFDYDDSPAARKQPDDNDIDEDEDEKKVEMRNNEGELKANSNQRKRKILLQLDYEAVISAWASQKSPWMTGGKPELDADECWPECMGTCGMELHQPYYGEMGAYGGGCQAGGMGDGGREARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVATQPPPSLSSCPLLSR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0857 473 MobiDBLite consensus disorder prediction 104 120 - -
Lele55g0857 473 SMART bboxneu5 14 61 IPR000315 GO:0008270
Lele55g0857 473 Pfam B-box zinc finger 16 58 IPR000315 GO:0008270
Lele55g0857 473 ProSiteProfiles CCT domain profile. 410 452 IPR010402 GO:0005515
Lele55g0857 473 MobiDBLite consensus disorder prediction 165 187 - -
Lele55g0857 473 MobiDBLite consensus disorder prediction 92 143 - -
Lele55g0857 473 MobiDBLite consensus disorder prediction 316 333 - -
Lele55g0857 473 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 8 454 - -
Lele55g0857 473 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Lele55g0857 473 CDD Bbox1_BBX-like 18 61 - -
Lele55g0857 473 Pfam CCT motif 410 452 IPR010402 GO:0005515
Lele55g0857 473 MobiDBLite consensus disorder prediction 292 333 - -
Lele55g0857 473 MobiDBLite consensus disorder prediction 165 202 - -
Lele55g0857 473 MobiDBLite consensus disorder prediction 292 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0857 Lele-ChrLele55 5946294 5947849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0857 5 452 C2C2-CO-like Transcription Factor Family AT1G25440 44.737 1.44e-106 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele55g0857 CCT 1.3e-17 CL0281