Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0853 ATGACGAACCCTCTGAAGAACCTCACAAAACCTGGGAACCTGATGAAATTCCCCAAAACGGTAGAGCAAAAGCCACATGTTCTTCCCTTTCGAAAGAAGCCTGTAATGTCACGAAAACTTCGGATTATTTATAACGATCCTGAAGCCACTGATTCATCTTCAAGCGAAGATGAAGAAGAAGAAGAGTGGAAAAGCAGAAAGCTGAAGAGGATTAAACGGTGTGTTCGTGAGTTCACTCTGCCCCCTCTTTTTTCTGAGAAAGCCAAACCTGTTGTTAAAACTGAGAGCTTAAATCGTAACTTTAATGGCAAAGGAGGTAAAGAATGTGAACCAGTTAAGCCTAAAGCACCAAGGAGACGTTCCTCTTCTCAATACAGAGGGGTTCGACTGAGAAATTCAGGCAAATGGGCGGCGGAGATTCGCCATCCTATCAAAGGTCGGAAATGGTTGGGTACTTTTGATACTCCGGAGGAAGCTTCTCAAGCTTACGAAGCCAAAAGAAGAGAGTTTGAAGCCATGGATTTATCGAAGAAGAGCCCTCCTTCTGTTACTGTTTCTTCATATTCATCTTCAGCCGAAGATTCCAGTAGTGTTATTTCTCAGTCATCATCACCGCCCTCTGTTCTTGAAGTTTATAATAGTCGTATTCCAAGCAAAGAAATCGATCATTTCGAGTCTGCATTTGCAGCTTTGCAAATGCCTGATTCGATTTTGTCATCGACATCACCACGTTGTTCTTCACCTTCACCTTTGAATTCATCAGAGGAATACCACAATACTTCAGGAAATAATAATGAAGCGAGTGATTTGGCGTCTGAACTTGATTTGAGTTTATCGGAAGTGCAAATTCCAGTTTGTTCATCAGAGCCAAATCACCTGTATGAGCTGGATTGTTTAATGGTGAATGATTTGGATCAGAATTTTGAAGATGATGATGATCTTTCTACGCTGCTGAGTATTGGAATTTGTGGATTTAACGATGATGTTCCTTGTGAGCTTCCAGATTTTGATTTTGGCGATTTTGGTGATGATGATGAGTTTGCTGGTTGGATTTAG 1056 0.4129 MTNPLKNLTKPGNLMKFPKTVEQKPHVLPFRKKPVMSRKLRIIYNDPEATDSSSSEDEEEEEWKSRKLKRIKRCVREFTLPPLFSEKAKPVVKTESLNRNFNGKGGKECEPVKPKAPRRRSSSQYRGVRLRNSGKWAAEIRHPIKGRKWLGTFDTPEEASQAYEAKRREFEAMDLSKKSPPSVTVSSYSSSAEDSSSVISQSSSPPSVLEVYNSRIPSKEIDHFESAFAALQMPDSILSSTSPRCSSPSPLNSSEEYHNTSGNNNEASDLASELDLSLSEVQIPVCSSEPNHLYELDCLMVNDLDQNFEDDDDLSTLLSIGICGFNDDVPCELPDFDFGDFGDDDEFAGWI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0853 351 SUPERFAMILY DNA-binding domain 123 170 IPR016177 GO:0003677
Lele55g0853 351 MobiDBLite consensus disorder prediction 239 269 - -
Lele55g0853 351 MobiDBLite consensus disorder prediction 95 128 - -
Lele55g0853 351 CDD AP2 123 165 IPR001471 GO:0003700|GO:0006355
Lele55g0853 351 MobiDBLite consensus disorder prediction 1 20 - -
Lele55g0853 351 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 243 - -
Lele55g0853 351 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Lele55g0853 351 PRINTS Ethylene responsive element binding protein signature 146 162 IPR001471 GO:0003700|GO:0006355
Lele55g0853 351 MobiDBLite consensus disorder prediction 43 65 - -
Lele55g0853 351 MobiDBLite consensus disorder prediction 179 205 - -
Lele55g0853 351 Gene3D AP2/ERF domain 123 175 IPR036955 GO:0003700|GO:0006355
Lele55g0853 351 SMART rav1_2 124 177 IPR001471 GO:0003700|GO:0006355
Lele55g0853 351 MobiDBLite consensus disorder prediction 151 205 - -
Lele55g0853 351 Pfam AP2 domain 124 172 IPR001471 GO:0003700|GO:0006355
Lele55g0853 351 ProSiteProfiles AP2/ERF domain profile. 124 180 IPR001471 GO:0003700|GO:0006355
Lele55g0853 351 MobiDBLite consensus disorder prediction 160 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0853 Lele-ChrLele55 5900784 5901839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0853 28 343 AP2-EREBP Transcription Factor Family AT1G68550 35.312 7.63e-37 133