Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0848 ATGAAGATATTCGTCAAGACTCTCAAGGGCACCAGCTTCGAAGTCGAAGTCAAGCCTGAGGATACGGTTTCTGAAGTGAAGAAACATATAGAAACTGTCCAGGGTGCAGCTGTATATCCTGCTGCACAGCAAATGCTTATTTATCAAGGGAAAGTTCTCAAAGATGGTACTACCTTGGAGGAAAGTGAAGTAGTTGAAAACAGTTTTGTTGTAATCATGCTATCAAAGAGTAAGAGCTCATCAGGCGAGGGATCTACTACTGCACCTTCAGTTAAGGCCTCTCAGACTAGTTCAGCTCCTACGCCAGCCCCTGCGGCAACAGCACCTCAAGCTCCTGCTCCAGCTGGGGCATCGCTTGTACCTGCGCCTGCACCTGCACCTTCGCCTTCACCAGCTCCTCCAGCTCCAGCTCCAGCTCCTGCTCCTGCTCCTGCTCCTGCCGTGTCAGGGTCTGATGTCTATGGGCAGGCAGCATCTAATCTTGTTGCTGGGAACAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGTGGAGGTAGCTGGGATAGGGATACTGTTGTCCGAGCTCTTCGTGCTGCTTTCAACAACCCTGAGAGAGCTGTTGAATACTTGTATACGGGTATCCCAGAGCAAGCTGAAGCTCCCCCAGTGGCTCCTGCGCCTGCAAGTGGTGCCCAAACTGGAAATGCTCCATCTGCAGCTCCACAAGCAGCACAACCTGCACCTGTTCCTTCAAGTGGGCCTAATGCTAATCCTTTAGATCTCTTTCCTCAGGGCCTCCCAAATGTTGGTGCTGGTGCAGCTGGTGCTGGCAATCTAGATTTTCTGCGCAACAGTCAACAGTTTCAAGCATTGCGAGCCATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTAATGAGATTGATTCAAGACCATCAAGCTGACTTCCTCCGCCTGATAAATGAACCTGTGGAAGGTGGCGAGGGGAATATGTTGGGGCAGCTGGCCAATGCCATGCCGCAAACAATAGCTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGGCTTGAAGCTATGGGATTCGATCGGGCCCTTGTTTTGGAGGTGTACTTTGCTTGTAACAAAAATGAAGAATTGGCTGCTAACTACCTCTTGGATCACATGCATGAGTTTGAGGAATGA 1200 0.4992 MKIFVKTLKGTSFEVEVKPEDTVSEVKKHIETVQGAAVYPAAQQMLIYQGKVLKDGTTLEESEVVENSFVVIMLSKSKSSSGEGSTTAPSVKASQTSSAPTPAPAATAPQAPAPAGASLVPAPAPAPSPSPAPPAPAPAPAPAPAPAVSGSDVYGQAASNLVAGNNLEGTIQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYTGIPEQAEAPPVAPAPASGAQTGNAPSAAPQAAQPAPVPSSGPNANPLDLFPQGLPNVGAGAAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQADFLRLINEPVEGGEGNMLGQLANAMPQTIAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0848 399 FunFam UV excision repair protein RAD23 homolog 346 394 - -
Lele55g0848 399 Gene3D - 1 80 - -
Lele55g0848 399 Gene3D - 347 394 - -
Lele55g0848 399 CDD UBA1_Rad23_plant 161 210 - -
Lele55g0848 399 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 352 393 IPR015940 -
Lele55g0848 399 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 165 208 IPR015940 -
Lele55g0848 399 Pfam UBA/TS-N domain 355 390 IPR015940 -
Lele55g0848 399 Pfam UBA/TS-N domain 170 205 IPR015940 -
Lele55g0848 399 SMART uba_6 167 207 IPR015940 -
Lele55g0848 399 SMART uba_6 355 392 IPR015940 -
Lele55g0848 399 SUPERFAMILY XPC-binding domain 270 336 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele55g0848 399 Gene3D - 160 210 - -
Lele55g0848 399 SUPERFAMILY UBA-like 334 397 IPR009060 GO:0005515
Lele55g0848 399 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lele55g0848 399 CDD Ubl_Rad23 1 74 - -
Lele55g0848 399 FunFam UV excision repair protein RAD23 B 265 330 - -
Lele55g0848 399 FunFam UV excision repair protein RAD23 1 80 - -
Lele55g0848 399 Pfam XPC-binding domain 274 329 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lele55g0848 399 MobiDBLite consensus disorder prediction 78 150 - -
Lele55g0848 399 Gene3D - 265 330 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele55g0848 399 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Lele55g0848 399 SMART CBM 272 315 IPR006636 -
Lele55g0848 399 TIGRFAM rad23: UV excision repair protein Rad23 1 398 IPR004806 GO:0006289
Lele55g0848 399 PRINTS DNA repair protein Rad23 signature 300 322 IPR004806 GO:0006289
Lele55g0848 399 PRINTS DNA repair protein Rad23 signature 381 396 IPR004806 GO:0006289
Lele55g0848 399 PRINTS DNA repair protein Rad23 signature 349 365 IPR004806 GO:0006289
Lele55g0848 399 PRINTS DNA repair protein Rad23 signature 366 380 IPR004806 GO:0006289
Lele55g0848 399 MobiDBLite consensus disorder prediction 78 104 - -
Lele55g0848 399 FunFam UV excision repair protein RAD23 homolog 160 210 - -
Lele55g0848 399 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lele55g0848 399 MobiDBLite consensus disorder prediction 116 145 - -
Lele55g0848 399 MobiDBLite consensus disorder prediction 215 259 - -
Lele55g0848 399 SMART ubq_7 1 75 IPR000626 GO:0005515
Lele55g0848 399 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 388 - -
Lele55g0848 399 SUPERFAMILY UBA-like 164 217 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0848 Lele-ChrLele55 5844019 5849313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele55g0848 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 2.99e-10 56.2